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SCNpilot_cont_300_bf_scaffold_79_curated_36

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(40753..42066)

Top 3 Functional Annotations

Value Algorithm Source
Hrp-dependent type III effector protein n=1 Tax=Variovorax paradoxus RepID=UPI0003604965 similarity UNIREF
DB: UNIREF100
  • Identity: 85.3
  • Coverage: 441.0
  • Bit_score: 729
  • Evalue 2.30e-207
type III effector hrp-dependent outer domain-containing protein similarity KEGG
DB: KEGG
  • Identity: 74.7
  • Coverage: 442.0
  • Bit_score: 631
  • Evalue 1.50e-178
Type III effector Hrp-dependent outer domain protein {ECO:0000313|EMBL:ADU38068.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 74.7
  • Coverage: 442.0
  • Bit_score: 631
  • Evalue 6.90e-178

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1314
ATGAGGCCGTGTCCGTCGATCGTCTACTACGGCGACGATTTCACCGGCGCGACCGATACGCTCGGCACCGCGGCCCGCGCGGGGCTGCGCGCGCTGCTGTTCCTGAAAGTGCCCGACGCGGCGCGCCTCGACCGCACCGGGCCGCTCGACGTGCTGGGCATCGCGGGCGCGTCGCGCGCCATGACGCCCGAGGAAATGCGCACCGAGCTTCGCCCGGTGGCCGCCCTGTTCCGCTCGCTGGGCGCGCGCGTGCTGCACTACAAGACCTGCTCCACCTTCGACAGCGCGCCGCACATCGGCTCGATCGGCGCGGCCGTGCGCACATTGCGCGCGGCGGTGCAGCAGCCGTGGACTGCCATCGTCGGCGGGCAGCCGAACCTGGGGCGCTATTGCCTCTTCGGAAACCTGTTCGCGGCCGCCGGCAGCGGCGCACAGGTGCACCGCGTCGACCGGCACCCGACGATGAGCATCCATCCGGTGACGCCCATGGACGAGGCGGATCTGCGGCTGCACCTGGCCAAGCAGGGGCTCGCGGATGTGCGTTCCATGCCGTTCACCGCAGCATCGCGCGGCTGCGAAGCTCTGGACACGGCGTTGCGGCAGACGCTGGATCTGCCACCGGCGGACGCCGTGCTGTTCGACGTGGCCGATGCGATGCAGCTGCGAGCCATCGGCCAGGTGCTGTGGACCAGGGCGCAAGGCGCCACGCTGCTGGCTGCGGGGCCGAGCAGCGTGGTGGATGCACTGGCGATGGCTTTGCCGCACCCGGGAGGCGACAGTGCGCCGCCGGCGCGCGCCGGTATGCCACCGGCCAACGGCCCGGTGCTTGTACTTGCGGGCAGCCTGTCGCCTGTCACCGCGCGGCAGGTGGCGACGGCGAAATCATTCGACATCGTGCGGCTCGACGCACAGAAGCTGGCGCAACGTGGCGCAGCCGATCAGGCCGAGGCCATCATCCGCCGCCTGGCGCACGGCCACCACGTGCTGGCCTGCACGCGCGCGCCCGGCCCGGTGCCATCGGGCATCGGGCTGGACGCCCAGGCGCTGGCCCGCGCGGGTGGCGAGTTGCTGGCGCAAGTGCTGGCAGCCGTGCCGCTGAAGCGCATCGGCGTGGCAGGCGGCGACACGTCCAGCCACGGCGTGCAGGCGCTTGACGCGTGGGCCCTGTCCTATCTCGCCGACATGGGCGCCGGCACCTCGCTGTGTCGCTTGCACAGCGACGACGCCTCGCTCGACGGCCTGGAAATCATGCTCAAGGGTGGCCAGATGGGTTCCGACGACGTGTTCGAGCGGCTGGTGCACGGTTTCCCCTAG
PROTEIN sequence
Length: 438
MRPCPSIVYYGDDFTGATDTLGTAARAGLRALLFLKVPDAARLDRTGPLDVLGIAGASRAMTPEEMRTELRPVAALFRSLGARVLHYKTCSTFDSAPHIGSIGAAVRTLRAAVQQPWTAIVGGQPNLGRYCLFGNLFAAAGSGAQVHRVDRHPTMSIHPVTPMDEADLRLHLAKQGLADVRSMPFTAASRGCEALDTALRQTLDLPPADAVLFDVADAMQLRAIGQVLWTRAQGATLLAAGPSSVVDALAMALPHPGGDSAPPARAGMPPANGPVLVLAGSLSPVTARQVATAKSFDIVRLDAQKLAQRGAADQAEAIIRRLAHGHHVLACTRAPGPVPSGIGLDAQALARAGGELLAQVLAAVPLKRIGVAGGDTSSHGVQALDAWALSYLADMGAGTSLCRLHSDDASLDGLEIMLKGGQMGSDDVFERLVHGFP*