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SCNpilot_cont_300_bf_scaffold_250_curated_13

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: 15808..16563

Top 3 Functional Annotations

Value Algorithm Source
LytTR family transcriptional regulator n=1 Tax=Variovorax paradoxus RepID=UPI000364176F similarity UNIREF
DB: UNIREF100
  • Identity: 93.6
  • Coverage: 249.0
  • Bit_score: 454
  • Evalue 6.20e-125
two component transcriptional regulator, LytTR family similarity KEGG
DB: KEGG
  • Identity: 95.1
  • Coverage: 247.0
  • Bit_score: 448
  • Evalue 1.10e-123
Two component transcriptional regulator, LytTR family {ECO:0000313|EMBL:AGU48567.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 95.1
  • Coverage: 247.0
  • Bit_score: 448
  • Evalue 4.80e-123

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 756
ATGAACATGAGCACACTGAAGACACTCATCGTCGACGACGAAGCCCTGGCCCGTTCCCGCCTGCGCACCCTGCTGCGGGACTGCAACTCGCCGGGCGCCGAGGTGGTGGCCGAGGCCGCGCAGGGCGCCGAGGCGCAGCAGCAGCTGGCCACGCTGGCGCTCGACCTGGTGCTGCTCGACGTGCACATGCCCGGCATTGACGGCATCGAGGTGGCGCGCGCGCTGCGAAGCCGCGCCGATGCGCCGGCGGTGGTGTTCGTCACCGCGCATGCGGCGCATGCGGTGACGGCCTTCGACCTCGACGCGGTCGACTACCTCACCAAGCCCGTGCGCGCCGAGCGCCTGCAGCAGGCGCTGCAGAAGGCCGAGCGCTTCCTGAAGGAGCGCCGCGCCCTGCAGGCCGAGGCCGCGCCGGAAACCGTGCTCATCCAGGACCGCGGCCGTGCCGAGCGCGTGCCGCTGTCCGAGGTGCTCTATCTCAAGTCCGAATACAAATACCTCACCGTGCGCACCGCCACGCGCAGCCACATCCTCGACGGCTCGCTCAACGAGTTCGAGGAGCGCTATCCGCACCGCTTCCTGCGCGTGCACCGCAACGCGCTGGTGGCGCGCGCGGCCATTCGCGCGCTCGAGAAATACGACGACGGCGAAGACGCCGAAGGCTGGGCACTGAGGCTCGACGCCATTCCCGAGCCGGTCGCGGTGTCGCGCCGCCAGCTGGCGGCCGTGCGCGAAGTGATCAAGGAAGCGCGATGA
PROTEIN sequence
Length: 252
MNMSTLKTLIVDDEALARSRLRTLLRDCNSPGAEVVAEAAQGAEAQQQLATLALDLVLLDVHMPGIDGIEVARALRSRADAPAVVFVTAHAAHAVTAFDLDAVDYLTKPVRAERLQQALQKAERFLKERRALQAEAAPETVLIQDRGRAERVPLSEVLYLKSEYKYLTVRTATRSHILDGSLNEFEERYPHRFLRVHRNALVARAAIRALEKYDDGEDAEGWALRLDAIPEPVAVSRRQLAAVREVIKEAR*