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SCNpilot_cont_300_bf_scaffold_250_curated_76

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(88853..90274)

Top 3 Functional Annotations

Value Algorithm Source
3-isopropylmalate dehydratase large subunit {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091369}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01026, ECO:0000256|SAAS:SAAS00091399};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01026}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 97.9
  • Coverage: 473.0
  • Bit_score: 931
  • Evalue 3.50e-268
3-isopropylmalate dehydratase, large subunit; K01703 3-isopropylmalate/(R)-2-methylmalate dehydratase large subunit [EC:4.2.1.33 4.2.1.35] similarity KEGG
DB: KEGG
  • Identity: 97.7
  • Coverage: 473.0
  • Bit_score: 927
  • Evalue 1.50e-267
isopropylmalate isomerase n=1 Tax=Variovorax paradoxus RepID=UPI0003681DE7 similarity UNIREF
DB: UNIREF100
  • Identity: 98.5
  • Coverage: 473.0
  • Bit_score: 934
  • Evalue 5.00e-269

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1422
ATGGCACGCACCCTCTACGACAAGATCTGGGACGAACACGTCGTCCACACCGAGGAAGACGGCACCGCGATCCTCTACATCGACCGCCACCTGGTGCACGAAGTGACCAGCCCGCAAGCCTTCGAAGGCCTGCGCGAGGCCGGCCGCAAGCTGTGGCGCATTAGCTCCGTGGTGGCCACCGCCGACCACAACACGCCCACCACCGGCTGGGAACGCGGCTACGAAGGCATCGCCGACCCGACCAGCAAGGAGCAGGTCACCACGCTGGACCACAACATCGCCGAATTCGGCGCCGCCGCGTTCTTCCCCTTCCTGAGCAAGCGCCAGGGCATCGTGCACGTGATCGGCCCCGAGTCGGGCGCGACGCTGCCGGGCATGACGGTGGTGTGCGGCGACTCGCACACCTCCACGCACGGCGCGTTCGGCGCGCTGGCGCACGGCATCGGCACCAGCGAGGTCGAGCACGTCATGGCCACGCAGACGCTGCTGGGCAAGAAGGCGAAGAACATGCTCGTGAAGGTCGACGGCAAGCTGCCGCTGGGCTGCACGGCCAAGGACATCGTGCTGGCGATCATCGGCAAGATCGGCACCGCCGGCGGCACGGGCTACACCATCGAATTCGCGGGTTCGGCCATTCGCGACTTGAGCATGGAAGGCCGCATGACGGTCTGCAACATGGCCATCGAGGCCGGCGCGCGCGCCGGGCTGGTGGCGGTAGACGAAAAGACCATCAGCTACGTCAAGGGCCGCCCGCTCGCGCCCACCGGCGTGGAGTGGGACCAGGCCGTGAGCTACTGGCGCACGCTGCAGTCCGACCCCGGCGCCAAGTTCGACGCCGTGGTCGAGCTCGACGCCGCGACCATCCCGCCGCAAGTGACCTGGGGCACCTCGCCCGAGATGGTGGTCGAGATCAACGGCCGCGTGCCCGATCCCGACAAGGAAAAGGACGCCAACAAGCGCGGCGCCATCGAGCGCGCGCTGGTCTACATGGGCCTGGAGCCCAACAAGGCCATGAACGACATCTTCATCGACAAGGTGTTCATCGGTTCGTGCACCAACAGCCGCATCGAGGACATGCGCGAAGCCGCCGCCGTGGTGAAGAAGCTGGGCCAGAAGGTCGCGAAGAACGTGAAGCTCGCGATGGTCGTGCCCGGCTCGGGCGTGGTGAAGGAGCAGGCCGAGCGCGAAGGCCTCGACGTGATCTTCAAGGCCGCCGGCTTCGAATGGCGCGAGCCCGGCTGCTCGATGTGCCTGGCCATGAACGCCGACCGCCTGGAGCCCGGCGAGCGCTGCGCATCCACCAGCAACCGCAACTTCGAAGGCCGCCAGGGCGCCGGTGGCCGCACCCACCTCGTGAGCCCGGCCATGGCCGCCGCCGCCGCCGTGCACGGCCACTTCGTCGACGTGCGCACCTTCGCCTGA
PROTEIN sequence
Length: 474
MARTLYDKIWDEHVVHTEEDGTAILYIDRHLVHEVTSPQAFEGLREAGRKLWRISSVVATADHNTPTTGWERGYEGIADPTSKEQVTTLDHNIAEFGAAAFFPFLSKRQGIVHVIGPESGATLPGMTVVCGDSHTSTHGAFGALAHGIGTSEVEHVMATQTLLGKKAKNMLVKVDGKLPLGCTAKDIVLAIIGKIGTAGGTGYTIEFAGSAIRDLSMEGRMTVCNMAIEAGARAGLVAVDEKTISYVKGRPLAPTGVEWDQAVSYWRTLQSDPGAKFDAVVELDAATIPPQVTWGTSPEMVVEINGRVPDPDKEKDANKRGAIERALVYMGLEPNKAMNDIFIDKVFIGSCTNSRIEDMREAAAVVKKLGQKVAKNVKLAMVVPGSGVVKEQAEREGLDVIFKAAGFEWREPGCSMCLAMNADRLEPGERCASTSNRNFEGRQGAGGRTHLVSPAMAAAAAVHGHFVDVRTFA*