ggKbase home page

SCNpilot_cont_300_bf_scaffold_250_curated_75

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: comp(88180..88836)

Top 3 Functional Annotations

Value Algorithm Source
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01031}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01031};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 96.3
  • Coverage: 216.0
  • Bit_score: 431
  • Evalue 6.80e-118
leuD2; 3-isopropylmalate dehydratase, small subunit LeuD (EC:4.2.1.33) similarity KEGG
DB: KEGG
  • Identity: 95.8
  • Coverage: 216.0
  • Bit_score: 430
  • Evalue 3.40e-118
3-isopropylmalate dehydratase small subunit n=1 Tax=Variovorax sp. CF313 RepID=J2KYX2_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 96.3
  • Coverage: 216.0
  • Bit_score: 431
  • Evalue 4.90e-118

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Variovorax sp. CF313 → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 657
ATGCAGAAATTCACCGTGCACAAGGGCCTCGTGGCACCGATGGACCGCGAGAACGTCGACACCGACGCGATCATTCCGAAGCAGTTCCTCAAGTCGATCAAGAAGACCGGCTTCGGCGTGAACCTGTTCGACGAGTGGCGCTACCTCGACGCCGGCTTTCCCGGCCAGGACCCGAAGAGCCGCAAGCCCAACCCCGACTTCGTGCTGAACCAGCCGCGCTACGCAGGCGCCTCGGTGCTGCTGGCGCGCAAGAACTTCGGCTGCGGCTCGTCGCGCGAGCATGCGCCATGGGCGCTCGACCAGTACGGCTTCCGCGCGATCATCGCGCCGAGCTACGCCGACATCTTCTTCAACAACAGCTTCAAGAACGGCCTGCTGCCGATCGTGCTGTCCGAAGCGCAAGTGGCCCAGCTGTTCGACGAGACCTTCGCTTTCCCCGGCTACTCGCTGACCATCGACCTGGAACGCCAGGTGGTGGTGAAGCCCGACGGCCAGGAGTTCGCGTTCGACGTGCAGGCCTTCCGCAAGTACTGCCTGATCAACGGGCTGGACGACATCGGCCTCACGCTGCGCCACCAGGACAAGATCAAGGCCTTCGAGGCCGAGCGCCTGGCGCAGAAGCCCTGGCTCGCGCATACGATGCTGGCCAACGCCTGA
PROTEIN sequence
Length: 219
MQKFTVHKGLVAPMDRENVDTDAIIPKQFLKSIKKTGFGVNLFDEWRYLDAGFPGQDPKSRKPNPDFVLNQPRYAGASVLLARKNFGCGSSREHAPWALDQYGFRAIIAPSYADIFFNNSFKNGLLPIVLSEAQVAQLFDETFAFPGYSLTIDLERQVVVKPDGQEFAFDVQAFRKYCLINGLDDIGLTLRHQDKIKAFEAERLAQKPWLAHTMLANA*