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SCNpilot_cont_300_bf_scaffold_116_curated_18

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: 35009..35578

Top 3 Functional Annotations

Value Algorithm Source
Transcriptional regulator n=1 Tax=Phyllobacterium sp. YR531 RepID=J3HQ46_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 64.5
  • Coverage: 186.0
  • Bit_score: 241
  • Evalue 8.10e-61
Variovorax paradoxus strain MEDvA23 contig_7, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ36205.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 80.0
  • Coverage: 185.0
  • Bit_score: 303
  • Evalue 1.90e-79
transcriptional regulator, TetR family similarity KEGG
DB: KEGG
  • Identity: 49.2
  • Coverage: 183.0
  • Bit_score: 175
  • Evalue 1.30e-41

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 570
ATGCCCAAGCCGACCAAATCAGAAATCGCCGCCGACATCATCGACGCCGCCGCGGCCCTGTTCGCCAAGCGTGGCTTCGACCACACCTCGCTCCAGCAGATCGCCGACGCCGTCAACTACTCGAAGACGGGGCTGCTGCACCATTTCCCGAGCAAGCTCGCGATCTATTCGGCGGCGATCGACTCGCTGCGCGAACATGCGCTGGAAGTGCGCGAACAGATGAAGGACATGCCCGTCGGCATCGAGCGCGACCGCGCCAATGTCGAAGTGGCGCTGCAGTACACCTACGACTGGCCTGGCGTGTCCGCACTCACCACCCGCATCGCCGAGAACGAGCCCGACGGCGACCCGCAACTGGTCGCGATCGGCCTGATCATCTACGAGGCGCTGGGTATCGACCTGGCCAAGCTGGACATGGAGCGCATCGTGCGCGTGACCAGCGCATTCACCGGGCTCAGCGTGTCGGCGCTGCAGGCGGTGCGCTCGGACCTGAAGCGGGAATGGCGCGAGCACATCATCGAAGCGGCCATGGGCGCGCTGGGCCACCCGGCGCGATCGAAGGCGAAGTAG
PROTEIN sequence
Length: 190
MPKPTKSEIAADIIDAAAALFAKRGFDHTSLQQIADAVNYSKTGLLHHFPSKLAIYSAAIDSLREHALEVREQMKDMPVGIERDRANVEVALQYTYDWPGVSALTTRIAENEPDGDPQLVAIGLIIYEALGIDLAKLDMERIVRVTSAFTGLSVSALQAVRSDLKREWREHIIEAAMGALGHPARSKAK*