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SCNpilot_cont_300_bf_scaffold_174_curated_3

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: 1978..2982

Top 3 Functional Annotations

Value Algorithm Source
ABC-type dipeptide/oligopeptide/nickel transport system, permease component n=1 Tax=Variovorax sp. CF313 RepID=J3CW97_9BURK similarity UNIREF
DB: UNIREF100
  • Identity: 97.0
  • Coverage: 334.0
  • Bit_score: 641
  • Evalue 6.20e-181
Variovorax paradoxus strain MEDvA23 contig_67, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ25634.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 97.3
  • Coverage: 334.0
  • Bit_score: 641
  • Evalue 8.70e-181
binding-protein-dependent transport systems inner membrane component; K12369 dipeptide transport system permease protein similarity KEGG
DB: KEGG
  • Identity: 96.4
  • Coverage: 334.0
  • Bit_score: 638
  • Evalue 1.70e-180

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1005
ATGTTTCGATTCATTCTGACCCGTGTGAGCCTGTTGGTGCCGACCTTCATCGGCATGACACTGCTCGCCTTTTTTCTCATCCGGCTCGTACCCGGCGACCCCATCGAGACGATGGCCGGCGAGCGTGGCATCGACCCCGCGCGCCACGCCGAACTGCGCACCGCCTACGGTTTCGACAAGCCGGTGATCGTGCAGTACGGCATCTACATCGGCCGCGTGCTGCACGGCGACCTGGGCAAGTCGATCATCACGCAGGACACGGTGATGAGCGAGTTCCTCGCGCTCTTCCCGGCCACCGTCGAACTCGCGGTCTGCGCCATTCTTTTCGCGCTGCTGCTGGGCCTGCCGGCCGGAATCCTGGCGGCGGTGCGGCGCAATTCCATCTTCGACCACGGCGTGATGGCCACGTCGCTCACCGGCTACTCGATGCCCATCTTCTGGTGGGGGCTGCTGCTGATCCTGTTCTTTTCGGTGCAGCTCGGATGGACGCCTGTGTCGGGGCGCATCGCGGTGCAGTACTACATCGAGCCCGAGACCGGCTTCCTGCTGATCGACTCGCTGCGCGCCGGCGACACCGGCGCGTTCTGGTCGGCGCTGCATCACCTGATATTGCCGGCCGTCGTGCTCGGCACCGTGCCGCTCGCGGTCATCGCGCGCATGACGCGCTCGGCCATGCTCGAGGTGCTCGGCGAAGACTACATCCGCACCGCGCGCGCCAAGGGCCTCTCGCGCCTTCGCGTGGTCGGGCTGCATGCGCTGCGCAATGCGCTCATTCCGGTGGTCACGGTGATCGGCCTTCAGGTGGGCGTGCTGTTCACCGGCGCGATCCTCACCGAGACCATCTTCTCGTGGCCGGGCGTCGGCAAGTGGCTCATCGAGGCCATCGGCCGGCGCGACTACCCGGTGCTGCAAGGCGGCATGCTGCTGCTCGGGGGCATCGTGATGCTGGTGAACCTGCTTGTCGACGTGGCCTATGGCGTCATCAACCCGCGCATCCGGCGCTGA
PROTEIN sequence
Length: 335
MFRFILTRVSLLVPTFIGMTLLAFFLIRLVPGDPIETMAGERGIDPARHAELRTAYGFDKPVIVQYGIYIGRVLHGDLGKSIITQDTVMSEFLALFPATVELAVCAILFALLLGLPAGILAAVRRNSIFDHGVMATSLTGYSMPIFWWGLLLILFFSVQLGWTPVSGRIAVQYYIEPETGFLLIDSLRAGDTGAFWSALHHLILPAVVLGTVPLAVIARMTRSAMLEVLGEDYIRTARAKGLSRLRVVGLHALRNALIPVVTVIGLQVGVLFTGAILTETIFSWPGVGKWLIEAIGRRDYPVLQGGMLLLGGIVMLVNLLVDVAYGVINPRIRR*