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SCNpilot_cont_300_bf_scaffold_22_curated_8

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: 6946..7644

Top 3 Functional Annotations

Value Algorithm Source
Two component transcriptional regulator, winged helix family n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V112_VARPE similarity UNIREF
DB: UNIREF100
  • Identity: 93.1
  • Coverage: 231.0
  • Bit_score: 428
  • Evalue 5.70e-117
winged helix family two component transcriptional regulator; K07664 two-component system, OmpR family, response regulator BaeR similarity KEGG
DB: KEGG
  • Identity: 93.1
  • Coverage: 231.0
  • Bit_score: 428
  • Evalue 1.80e-117
Variovorax paradoxus strain MEDvA23 contig_25, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ32839.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 92.8
  • Coverage: 235.0
  • Bit_score: 428
  • Evalue 4.70e-117

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Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 699
ATGACACGCATCGTCATCGTCGAAGACGAGATCGACATCGCCTCCGTGGTGCAGGACTACCTGCGCCATGCCGGCTACGAAACCACGCACTTCACAGACGGGCAGAGCGCGCTCGACAGCATCGTGGCCACGCCGCCCGACCTCACGCTGCTCGACATCATGCTGCCCCGGCTGGACGGCATCGAGGTGCTGCGGCGCGCGCGCGAGCACACGGCGCACCCGATCATCATGCTCACCGCGCGCATCGAGGAAGTCGACCGGTTGCTGGGCCTGGAGCTGGGCGCCGACGACTACGTGTGCAAGCCCTTCTCGCCGCGCGAGCTGGTGGCGCGCGTGCGTGCCGTGCTGCGGCGCACCGCGCCGGGCAATGCGCCCGGGCAAGGCTCGTCGCAGAGCGACGCGCCGGGCCTGGTGCTGGACGACGTGCACTGGCGCGCTTCGCTCGAAGGCACGCCGCTGAACCTCACGCGGCGCGAGTTCGGGCTGCTGCAGGTGCTGTCGCGGCACCCGGGGCGCATCTTCTCGCGCGCGCGGCTGCTGGAGCTGGCCTACGACGACACCGTGGACGTGACCGAGCGCGCCATCGACAGCCACGTGAAGAACCTGCGCCGCAAGCTCGGCGCGGTGACGCCGGAGCACGACTGGATCCGCTCGGTGTACGGCGTGGGCTTTGCGTGGGAAGCGCCGGTGCCGGCCTGA
PROTEIN sequence
Length: 233
MTRIVIVEDEIDIASVVQDYLRHAGYETTHFTDGQSALDSIVATPPDLTLLDIMLPRLDGIEVLRRAREHTAHPIIMLTARIEEVDRLLGLELGADDYVCKPFSPRELVARVRAVLRRTAPGNAPGQGSSQSDAPGLVLDDVHWRASLEGTPLNLTRREFGLLQVLSRHPGRIFSRARLLELAYDDTVDVTERAIDSHVKNLRRKLGAVTPEHDWIRSVYGVGFAWEAPVPA*