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SCNpilot_cont_300_bf_scaffold_22_curated

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Displaying items 1-30 of 505 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_22_curated_1
unknown

Not on your lists

comp(3..95)
DNA (93bp) protein (31aa)
Outer membrane protein (Porin) n=1 Tax=Variovorax sp. CF313 RepID=J3CB80_9BURK
SCNpilot_cont_300_bf_scaffold_22_curated_2
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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309..917
DNA (609bp) protein (203aa)
Nuclease-like domain-containing protein n=1 Tax=Variovorax paradoxus B4 RepID=T1XG39_VARPD
nuclease-like domain-containing protein
Nuclease-like domain-containing protein {ECO:0000313|EMBL:AGU51486.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_22_curated_3
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

993..3395
DNA (2403bp) protein (801aa)
Outer membrane protein assembly factor BamA n=1 Tax=Variovorax sp. CF313 RepID=J3CXB1_9BURK
Outer membrane protein assembly factor BamA {ECO:0000256|HAMAP-Rule:MF_01430, ECO:0000256|SAAS:SAAS00011174}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
outer membrane protein assembly complex, yaet protein; K07277 outer membrane protein
SCNpilot_cont_300_bf_scaffold_22_curated_4
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3412..4128
DNA (717bp) protein (239aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V107_VARPE
winged helix family two component transcriptional regulator
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:ADU39030.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_22_curated_5
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4131..4997)
DNA (867bp) protein (289aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036DDED2
putative intradiol ring-cleavage dioxygenase
Putative intradiol ring-cleavage dioxygenase {ECO:0000313|EMBL:AGU51490.1}; TaxID=1246301 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus B4.;"
SCNpilot_cont_300_bf_scaffold_22_curated_6
unknown

Not on your lists

comp(4994..5155)
DNA (162bp) protein (54aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_22_curated_7
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5189..6949
DNA (1761bp) protein (587aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
integral membrane sensor signal transduction histidine kinase; K07642 two-component system, OmpR family, sensor histidine kinase BaeS [EC:2.7.13.3]
Signal transduction histidine kinase n=1 Tax=Variovorax sp. CF313 RepID=J2L4M2_9BURK
SCNpilot_cont_300_bf_scaffold_22_curated_8
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6946..7644
DNA (699bp) protein (233aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V112_VARPE
winged helix family two component transcriptional regulator; K07664 two-component system, OmpR family, response regulator BaeR
Variovorax paradoxus strain MEDvA23 contig_25, whole genome shotgun sequence {ECO:0000313|EMBL:KIQ32839.1}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;"
SCNpilot_cont_300_bf_scaffold_22_curated_9
Alicycliphilus sp. B1, Alicycliphilus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7666..10431)
DNA (2766bp) protein (922aa)
magnesium-transporting ATPase MgtA (EC:3.6.3.2)
magnesium-transporting ATPase n=1 Tax=Cupriavidus sp. UYPR2.512 RepID=UPI00037BB0E5
Magnesium transporter {ECO:0000313|EMBL:GAO21036.1}; TaxID=1603291 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Alicycliphilus.;" source="Alicycliphilus sp. B1.;"
SCNpilot_cont_300_bf_scaffold_22_curated_10
unknown

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comp(10428..10859)
DNA (432bp) protein (144aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_22_curated_11
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(10877..12190)
DNA (1314bp) protein (438aa)
Outer membrane efflux protein n=1 Tax=Cupriavidus basilensis OR16 RepID=H1RZI2_9BURK
Outer membrane efflux protein {ECO:0000313|EMBL:EHP44324.1}; TaxID=1127483 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basilensis OR16.;"
outer membrane efflux protein; K15725 cobalt-zinc-cadmium resistance protein CzcC
SCNpilot_cont_300_bf_scaffold_22_curated_12
Cupriavidus basilensis, Cupriavidus, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12187..15318)
DNA (3132bp) protein (1044aa)
CzcA family heavy metal efflux pump n=1 Tax=Cupriavidus basilensis OR16 RepID=H1RZI1_9BURK
Cupriavidus basilensis strain 4G11 chromosome secondary, complete sequence {ECO:0000313|EMBL:AJG22883.1}; TaxID=68895 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Cupriavidus.;" source="Cupriavidus basilensis.;"
CzcA family heavy metal efflux pump; K15726 cobalt-zinc-cadmium resistance protein CzcA
SCNpilot_cont_300_bf_scaffold_22_curated_13
Acidovorax ebreus, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15311..16441)
DNA (1131bp) protein (377aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Acidovorax ebreus (strain TPSY) RepID=B9MIX7_ACIET
RND family efflux transporter MFP subunit; K15727 cobalt-zinc-cadmium resistance protein CzcB
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:ACM34943.1}; Flags: Precursor;; TaxID=535289 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax ebreus (strain TPSY) (Diaphorobacter sp. (strain TPSY)).;"
SCNpilot_cont_300_bf_scaffold_22_curated_14
Acidovorax citrulli, Acidovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16510..16842)
DNA (333bp) protein (111aa)
Putative uncharacterized protein n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TJW6_ACIAC
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABM31254.1}; TaxID=397945 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Acidovorax.;" source="Acidovorax citrulli (strain AAC00-1) (Acidovorax avenae subsp.; citrulli).;"
SCNpilot_cont_300_bf_scaffold_22_curated_15
Burkholderia sp. AU4i, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17454..18146)
DNA (693bp) protein (231aa)
hypothetical protein n=1 Tax=Duganella zoogloeoides RepID=UPI00037FD53B
Transcriptional regulator, TetR family {ECO:0000313|EMBL:ERJ33818.1}; TaxID=1335308 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia sp. AU4i.;"
TetR family transcriptional regulator; K09017 TetR/AcrR family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_22_curated_16
Burkholderia sp. MR1, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18143..19594)
DNA (1452bp) protein (484aa)
Transcriptional regulator, GntR family with aminotransferase domain n=1 Tax=Burkholderia phytofirmans (strain DSM 17436 / PsJN) RepID=B2TEU5_BURPP
Transcriptional regulator, GntR family with aminotransferase domain containing protein {ECO:0000313|EMBL:KIG07589.1}; TaxID=870478 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. MR1.;"
GntR family transcriptional regulator with aminotransferase domain
SCNpilot_cont_300_bf_scaffold_22_curated_17
R_Burkholderiales_64_960, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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19861..21231
DNA (1371bp) protein (457aa)
gltD; glutamate synthase subunit beta (EC:1.4.1.13)
Glutamate synthase subunit beta n=1 Tax=Acidovorax sp. KKS102 RepID=K0I0D4_9BURK
Tax=RIFCSPHIGHO2_01_FULL_Burkholderiales_64_960_curated
SCNpilot_cont_300_bf_scaffold_22_curated_18
GWA2_Burkholderiales_64_37_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21317..22627
DNA (1311bp) protein (437aa)
dihydropyrimidine dehydrogenase (EC:1.3.1.1 1.3.1.2); K00207 dihydropyrimidine dehydrogenase (NADP+) [EC:1.3.1.2]
Dihydrouracil dehydrogenase (NAD+) / dihydropyrimidine dehydrogenase (NADP+) n=1 Tax=Acidovorax citrulli (strain AAC00-1) RepID=A1TKS7_ACIAC
Tax=GWA2_Burkholderiales_64_37_curated
SCNpilot_cont_300_bf_scaffold_22_curated_19
Janthinobacterium lividum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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22720..24225
DNA (1506bp) protein (502aa)
nitrate reductase n=1 Tax=Duganella zoogloeoides RepID=UPI0003625CDD
NCS1 nucleoside transporter family protein {ECO:0000313|EMBL:EZP37458.1}; TaxID=29581 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium lividum.;"
NCS1 nucleoside transporter family; K03457 nucleobase:cation symporter-1, NCS1 family
SCNpilot_cont_300_bf_scaffold_22_curated_20
Massilia sp. JS1662, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24242..25681
DNA (1440bp) protein (480aa)
dihydropyrimidinase (EC:3.5.2.2); K01464 dihydropyrimidinase [EC:3.5.2.2]
phenylhydantoinase n=1 Tax=Curvibacter lanceolatus RepID=UPI0003611512
Phenylhydantoinase {ECO:0000313|EMBL:KGF82599.1}; TaxID=1519190 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. JS1662.;"
SCNpilot_cont_300_bf_scaffold_22_curated_21
Janthinobacterium agaricidamnosum, Janthinobacterium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

25702..26958
DNA (1257bp) protein (419aa)
Amidase, hydantoinase/carbamoylase family protein {ECO:0000313|EMBL:CDG85001.1}; EC=3.5.-.- {ECO:0000313|EMBL:CDG85001.1};; TaxID=1349767 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Janthinobacterium.;" source="Janthinobacterium agaricidamnosum NBRC 102515 = DSM 9628.;"
hydantoinase/carbamoylase family amidase (EC:3.5.1.87); K06016 N-carbamoyl-L-amino-acid hydrolase [EC:3.5.1.87]
allantoate amidohydrolase n=1 Tax=Oxalobacteraceae bacterium AB_14 RepID=UPI00035D7CC2
SCNpilot_cont_300_bf_scaffold_22_curated_22
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(26977..28194)
DNA (1218bp) protein (406aa)
Acyl-CoA dehydrogenase n=1 Tax=Variovorax sp. CF313 RepID=J2KJ08_9BURK
Acyl-CoA dehydrogenase {ECO:0000313|EMBL:EJL80165.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
acyL-CoA dehydrogenase domain-containing protein
SCNpilot_cont_300_bf_scaffold_22_curated_23
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

28326..29651
DNA (1326bp) protein (442aa)
NUDIX family protein n=1 Tax=Variovorax sp. CF313 RepID=J3CXB4_9BURK
NUDIX family protein {ECO:0000313|EMBL:EJL80166.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
putative hydrolase, NUDIX family
SCNpilot_cont_300_bf_scaffold_22_curated_24
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

29686..31905
DNA (2220bp) protein (740aa)
YccS/YhfK family integral membrane protein n=1 Tax=Variovorax paradoxus RepID=UPI0003824B56
Putative membrane protein, TIGR01666 {ECO:0000313|EMBL:EJL80167.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
integral membrane protein, yccs/yhfk family
SCNpilot_cont_300_bf_scaffold_22_curated_25
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32021..32389
DNA (369bp) protein (123aa)
hypothetical protein n=1 Tax=Variovorax paradoxus RepID=UPI00036CA93D
Uncharacterized protein {ECO:0000313|EMBL:EJL80168.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein
SCNpilot_cont_300_bf_scaffold_22_curated_26
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

32578..33273
DNA (696bp) protein (232aa)
membrane protein n=1 Tax=Variovorax paradoxus RepID=UPI0003639F4E
FtsH-interacting integral membrane protein {ECO:0000313|EMBL:EJL80169.1}; Flags: Precursor;; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
hypothetical protein; K06890
SCNpilot_cont_300_bf_scaffold_22_curated_27
Variovorax sp. CF313, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

33300..33842
DNA (543bp) protein (181aa)
Rrf2 family protein, putative transcriptional regulator n=1 Tax=Variovorax sp. CF313 RepID=J2KJ12_9BURK
Rrf2 family protein, putative transcriptional regulator {ECO:0000313|EMBL:EJL80170.1}; TaxID=1144315 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax sp. CF313.;"
BadM/Rrf2 family transcriptional regulator
SCNpilot_cont_300_bf_scaffold_22_curated_28
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

34079..35230
DNA (1152bp) protein (384aa)
hemolysin D n=1 Tax=Variovorax paradoxus RepID=UPI00036FAF8C
RND family efflux transporter mfp subunit; K03585 membrane fusion protein
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:ADU39040.1}; Flags: Precursor;; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
SCNpilot_cont_300_bf_scaffold_22_curated_29
Variovorax paradoxus, Variovorax, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

35241..38369
DNA (3129bp) protein (1043aa)
Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family n=1 Tax=Variovorax paradoxus (strain EPS) RepID=E6V118_VARPE
Transporter, hydrophobe/amphiphile efflux-1 (HAE1) family {ECO:0000313|EMBL:ADU39041.1}; TaxID=595537 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus (strain EPS).;"
transporter, hydrophobe/amphiphile efflux-1 (hae1) family
SCNpilot_cont_300_bf_scaffold_22_curated_30
Comamonas testosteroni, Comamonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

38513..38989
DNA (477bp) protein (159aa)
RNA polymerase subunit sigma-24 n=1 Tax=Comamonas sp. B-9 RepID=UPI00039594F1
RNA polymerase subunit sigma-24 {ECO:0000313|EMBL:KGH27900.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;"
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily
Displaying items 1-30 of 505 in total

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