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SCNpilot_cont_300_bf_scaffold_22_curated_30

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: 38513..38989

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase subunit sigma-24 n=1 Tax=Comamonas sp. B-9 RepID=UPI00039594F1 similarity UNIREF
DB: UNIREF100
  • Identity: 58.4
  • Coverage: 154.0
  • Bit_score: 181
  • Evalue 8.30e-43
RNA polymerase subunit sigma-24 {ECO:0000313|EMBL:KGH27900.1}; TaxID=285 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Comamonas.;" source="Comamonas testosteroni (Pseudomonas testosteroni).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 56.6
  • Coverage: 152.0
  • Bit_score: 167
  • Evalue 1.70e-38
ECF subfamily RNA polymerase sigma-24 subunit; K03088 RNA polymerase sigma-70 factor, ECF subfamily similarity KEGG
DB: KEGG
  • Identity: 52.6
  • Coverage: 152.0
  • Bit_score: 156
  • Evalue 9.00e-36

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Taxonomy

Comamonas testosteroni → Comamonas → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 477
GTGCTCGAGCGCTACTACAGAGAACTGTTGCGGTATTTCACCCGCAAGGCCGGCGACGGCGACACCGCCGCGGACGTCGTGCAAGAGGCCTATGCCCGCGTGCTCATTCACCAGGACGGCGGCGGCACGGTCCTCGAGCCCCGCGCCTTCCTCTACCAGACCGGACGCAACGTGCTCGCCAACCAGGCCGCGCGCCGCGCCGCCGAAACCCGCATGCTCGACACGCTCGCGCTGGTGAGCGACCACAGCGCGCCGTCCGTTGAGCGGCACGTCGGCGCGCGGCAGCAGCTCGACCGGCTGGTGGCGCTGCTCGAAGACATGCCGCGCAAACGCCGCAACGCCTTCATCCTCGTGCGCATCCACGGCCTGAGCTACGCCCAGACCGCCGCCCACATGGAAATCAGCGAGAAGGCCGTGGAGCGCCACATGACACGCGCCCTGCTCGACTGCGCCGGCTACGGGCCGGCCGGGGACTGA
PROTEIN sequence
Length: 159
VLERYYRELLRYFTRKAGDGDTAADVVQEAYARVLIHQDGGGTVLEPRAFLYQTGRNVLANQAARRAAETRMLDTLALVSDHSAPSVERHVGARQQLDRLVALLEDMPRKRRNAFILVRIHGLSYAQTAAHMEISEKAVERHMTRALLDCAGYGPAGD*