ggKbase home page

SCNpilot_cont_300_bf_scaffold_118_curated_6

Organism: scnpilot_dereplicated_Variovorax_1

near complete RP 52 / 55 MC: 3 BSCG 51 / 51 ASCG 13 / 38 MC: 1
Location: 3624..4244

Top 3 Functional Annotations

Value Algorithm Source
50S ribosomal protein L4 n=1 Tax=Variovorax paradoxus RepID=UPI00036EB6BD similarity UNIREF
DB: UNIREF100
  • Identity: 99.5
  • Coverage: 206.0
  • Bit_score: 404
  • Evalue 7.90e-110
rplD; 50S ribosomal protein L4; K02926 large subunit ribosomal protein L4 similarity KEGG
DB: KEGG
  • Identity: 98.1
  • Coverage: 206.0
  • Bit_score: 400
  • Evalue 2.70e-109
50S ribosomal protein L4 {ECO:0000256|HAMAP-Rule:MF_01328}; TaxID=34073 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Comamonadaceae; Variovorax.;" source="Variovorax paradoxus.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 98.1
  • Coverage: 206.0
  • Bit_score: 400
  • Evalue 1.20e-108

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Variovorax paradoxus → Variovorax → Burkholderiales → Betaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 621
ATGCAACTCGAACTCCTGAACGAACAAGGCCAGGCCGCGTCGAAGTACGACGCTCCCGAGACCGTGTTCGGCCGTGACTACAACGAAGACCTGGTCCACCAGATCGTCGTTGCATTCCAGGCCAACGCCCGTCAAGGCACGCGCGCCCAGAAGGACCGCGAACAGGTCAAGCACTCGACCAAGAAGCCTTTCAAGCAAAAGGGAACGGGCCGCGCCCGTGCCGGTATGACGTCCTCGCCGCTGTGGCGCGGGGGTGGTCGTATCTTCCCGAACATGCCCGACGAAAACTTCTCGCAGAAGATCAACAAGAAGATGTACCGCGCCGGCATGGCCTCCATCTTCTCGCAACTCGCTCGCGAAGGCCGTCTGGCCGTGGTCGATTCGATCAAGGTCGACTCGCCCAAGACCAAGCCGCTGGCTGCCCGTTTCAAGGCGATGAATCTCGAGTCCGTGCTCGTGATCGCCGAAGAAGTCGACGAAAACCTGTACCTTGCCTCGCGCAATCTGGTGAACGTTCTCGTGGTCGAACCCCGTTACGCCGATCCGGTGTCGCTGGTTCACTACAAGAAGGTGCTGGTCACCAAGGGTGCCGTCGACAAGCTCAAGGAGATGTTCGCATGA
PROTEIN sequence
Length: 207
MQLELLNEQGQAASKYDAPETVFGRDYNEDLVHQIVVAFQANARQGTRAQKDREQVKHSTKKPFKQKGTGRARAGMTSSPLWRGGGRIFPNMPDENFSQKINKKMYRAGMASIFSQLAREGRLAVVDSIKVDSPKTKPLAARFKAMNLESVLVIAEEVDENLYLASRNLVNVLVVEPRYADPVSLVHYKKVLVTKGAVDKLKEMFA*