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SCNpilot_cont_1000_p_scaffold_1277_curated

Search features with annotation key words

Displaying items 1-30 of 31 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_1277_curated_1
unknown

Not on your lists

3..128
DNA (126bp) protein (42aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1277_curated_2
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(85..1221)
DNA (1137bp) protein (379aa)
Monogalactosyldiacylglycerol synthase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DCI7_9BACT
Monogalactosyldiacylglycerol synthase {ECO:0000313|EMBL:EDY15863.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
UDP-N-acetylglucosamine:LPS N-acetylglucosamine transferase fused to PHP family phosphoesterase
SCNpilot_cont_1000_p_scaffold_1277_curated_3
Tolypothrix campylonemoides, Tolypothrix, Nostocales, Cyanobacteria, Bacteria

Not on your lists

comp(1218..2288)
DNA (1071bp) protein (357aa)
Magnesium and cobalt transport protein CorA n=1 Tax=Anabaena variabilis (strain ATCC 29413 / PCC 7937) RepID=Q3MF17_ANAVT
Magnesium transport protein CorA {ECO:0000256|RuleBase:RU362010}; TaxID=1245935 species="Bacteria; Cyanobacteria; Nostocales; Microchaetaceae; Tolypothrix.;" source="Tolypothrix campylonemoides VB511288.;"
magnesium/cobalt transporter CorA; K03284 magnesium transporter
SCNpilot_cont_1000_p_scaffold_1277_curated_4
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(2296..3201)
DNA (906bp) protein (302aa)
thiamine-monophosphate kinase; K00946 thiamine-monophosphate kinase [EC:2.7.4.16]
hypothetical protein n=1 Tax=Verrucomicrobium sp. 3C RepID=UPI00037C4C39
Thiamine-monophosphate kinase {ECO:0000313|EMBL:EDY18654.1}; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
SCNpilot_cont_1000_p_scaffold_1277_curated_5
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(3198..3971)
DNA (774bp) protein (258aa)
possible membrane associated protease n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745117
Abortive infection protein; K07052
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
SCNpilot_cont_1000_p_scaffold_1277_curated_6
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

Not on your lists

comp(3975..4982)
DNA (1008bp) protein (336aa)
sppA; Periplasmic serine protease, ClpP class; K04773 protease IV [EC:3.4.21.-]
Signal peptide peptidase SppA, 36K type n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D455_9BACT
Signal peptide peptidase SppA, 36K type {ECO:0000313|EMBL:EDY18656.1}; Flags: Precursor;; TaxID=497964 species="Bacteria; Verrucomicrobia; Spartobacteria; Chthoniobacter.;" source="Chthoniobacter flavus Ellin428.;"
SCNpilot_cont_1000_p_scaffold_1277_curated_7
Chthoniobacter flavus, Chthoniobacter, Spartobacteria, Verrucomicrobia, Bacteria

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5165..6493
DNA (1329bp) protein (443aa)
Ribosomal RNA small subunit methyltransferase A {ECO:0000256|HAMAP-Rule:MF_00607}; EC=2.1.1.182 {ECO:0000256|HAMAP-Rule:MF_00607};; 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethyladenosine transferase {ECO:0000256|HAMAP-Rule:MF_00607}; 16S rRNA dimethylase {ECO:0000256|HAMAP-Rule:MF_00607}; S-adenosylmethionine-6-N', N'-adenosyl(rRNA) dimethyltransferase {ECO:0000256|HAMAP-Rule:MF_00607}; TaxID=497964 species="Bacteria; Verrucomicrobi
dimethyladenosine transferase; K02528 16S rRNA (adenine1518-N6/adenine1519-N6)-dimethyltransferase [EC:2.1.1.182]
Ribosomal RNA small subunit methyltransferase A n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CU73_9BACT
SCNpilot_cont_1000_p_scaffold_1277_curated_8
Desulfotomaculum reducens, Desulfotomaculum, Clostridiales, Clostridia, Firmicutes, Bacteria

Not on your lists

comp(6490..7689)
DNA (1200bp) protein (400aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Desulfotomaculum reducens (strain MI-1) RepID=A4J8M8_DESRM
RND family efflux transporter MFP subunit; K02005 HlyD family secretion protein
Efflux transporter, RND family, MFP subunit {ECO:0000313|EMBL:ABO51431.1}; TaxID=349161 species="Bacteria; Firmicutes; Clostridia; Clostridiales; Peptococcaceae; Desulfotomaculum.;" source="Desulfotomaculum reducens (strain MI-1).;"
SCNpilot_cont_1000_p_scaffold_1277_curated_9
[Bacillus] selenitireducens, Bacillales, Bacilli, Firmicutes, Bacteria

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comp(7695..9548)
DNA (1854bp) protein (618aa)
ABC transporter-like protein; K11085 ATP-binding cassette, subfamily B, bacterial MsbA [EC:3.6.3.-]
ABC transporter related protein n=1 Tax=Bacillus selenitireducens (strain ATCC 700615 / DSM 15326 / MLS10) RepID=D6XYF4_BACIE
ABC transporter related protein {ECO:0000313|EMBL:ADI00223.1}; TaxID=439292 species="Bacteria; Firmicutes; Bacilli; Bacillales; Sporolactobacillaceae; unclassified Sporolactobacillaceae.;" source="Bacillus selenitireducens (strain ATCC 700615 / DSM 15326 / MLS10).;"
SCNpilot_cont_1000_p_scaffold_1277_curated_10
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(9628..12105)
DNA (2478bp) protein (826aa)
DNA topoisomerase {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608}; EC=5.99.1.2 {ECO:0000256|RuleBase:RU000518, ECO:0000256|SAAS:SAAS00046608};; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
DNA topoisomerase III; K03169 DNA topoisomerase III [EC:5.99.1.2]
DNA topoisomerase n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9XL73_9BACT
SCNpilot_cont_1000_p_scaffold_1277_curated_11
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

comp(12108..13199)
DNA (1092bp) protein (364aa)
DNA protecting protein DprA n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D957_9BACT
DNA protecting protein DprA
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
SCNpilot_cont_1000_p_scaffold_1277_curated_12
Pseudomonas stutzeri, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13354..13752
DNA (399bp) protein (133aa)
Ring-cleaving dioxygenase n=1 Tax=Pseudomonas stutzeri CCUG 29243 RepID=I4CUC4_PSEST
ring-cleaving dioxygenase
Ring-cleaving dioxygenase {ECO:0000313|EMBL:AFM33681.1}; TaxID=1196835 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas stutzeri CCUG 29243.;"
SCNpilot_cont_1000_p_scaffold_1277_curated_13
unknown

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14542..15174
DNA (633bp) protein (211aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1277_curated_14
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(15161..16570)
DNA (1410bp) protein (470aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
Signal transduction histidine kinase n=1 Tax=Opitutaceae bacterium TAV1 RepID=I6AQF5_9BACT
two-component sensor histidine kinase
SCNpilot_cont_1000_p_scaffold_1277_curated_15
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(16567..17286)
DNA (720bp) protein (240aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IXI4_9BACT
Chemotaxis protein CheY {ECO:0000313|EMBL:AHF89419.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
two component transcriptional regulator; K02483 two-component system, OmpR family, response regulator
SCNpilot_cont_1000_p_scaffold_1277_curated_16
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

17457..20666
DNA (3210bp) protein (1070aa)
Acriflavin resistance protein n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IXI3_9BACT
Multidrug transporter {ECO:0000313|EMBL:AHF89418.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
acriflavin resistance protein
SCNpilot_cont_1000_p_scaffold_1277_curated_17
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

20663..21742
DNA (1080bp) protein (360aa)
Efflux transporter, RND family, MFP subunit n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IXI1_9BACT
RND transporter {ECO:0000313|EMBL:AHF89417.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
putative multidrug resistance protein mdtA precursor (Multidrug transporter mdtA)
SCNpilot_cont_1000_p_scaffold_1277_curated_18
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21789..22310)
DNA (522bp) protein (174aa)
Uncharacterized protein n=1 Tax=Afipia felis ATCC 53690 RepID=K8NHN5_AFIFE
Uncharacterized protein {ECO:0000313|EMBL:EKS29842.1}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
glyoxalase/bleomycin resistance protein/dioxygenase; K07104
SCNpilot_cont_1000_p_scaffold_1277_curated_19
unknown

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22468..22983
DNA (516bp) protein (172aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1277_curated_20
CG_Arma_01, Armatimonadetes, Bacteria

Not on your lists

comp(22990..23550)
DNA (561bp) protein (187aa)
Putative uncharacterized protein n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IVB7_9BACT
Tax=CG_Arma_01
SCNpilot_cont_1000_p_scaffold_1277_curated_21
unknown

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comp(23945..24652)
DNA (708bp) protein (236aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1277_curated_22
Thiorhodococcus sp. AK35, Thiorhodococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

24944..25801
DNA (858bp) protein (286aa)
Acetyltransferase (GNAT) family protein n=1 Tax=Thioflavicoccus mobilis 8321 RepID=L0GWM4_9GAMM
GCN5-related N-acetyltransferase {ECO:0000313|EMBL:EXJ13376.1}; TaxID=1249627 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodococcus.;" source="Thiorhodococcus sp. AK35.;"
acetyltransferase (GNAT) family protein
SCNpilot_cont_1000_p_scaffold_1277_curated_23
unknown

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comp(25881..26318)
DNA (438bp) protein (146aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1277_curated_24
unknown

Not on your lists

26414..26527
DNA (114bp) protein (38aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1277_curated_25
Pedosphaera parvula, Pedosphaera, Verrucomicrobiales, Verrucomicrobiae, Verrucomicrobia, Bacteria

Not on your lists

26652..28001
DNA (1350bp) protein (450aa)
Integrase domain protein SAM domain protein n=1 Tax=Pedosphaera parvula Ellin514 RepID=B9X9W3_9BACT
Integrase domain protein SAM domain protein {ECO:0000313|EMBL:EEF63304.1}; TaxID=320771 species="Bacteria; Verrucomicrobia; Verrucomicrobiae; Verrucomicrobiales; Verrucomicrobia subdivision 3; Pedosphaera.;" source="Pedosphaera parvula (strain Ellin514).;"
SCNpilot_cont_1000_p_scaffold_1277_curated_26
Desulfococcus oleovorans, Desulfococcus, Desulfobacterales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(28054..28761)
DNA (708bp) protein (236aa)
Uncharacterized protein n=1 Tax=Desulfococcus oleovorans (strain DSM 6200 / Hxd3) RepID=A8ZZS1_DESOH
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ABW68943.1}; TaxID=96561 species="Bacteria; Proteobacteria; Deltaproteobacteria; Desulfobacterales; Desulfobacteraceae; Desulfococcus.;" source="Desulfococcus oleovorans (strain DSM 6200 / Hxd3).;"
SCNpilot_cont_1000_p_scaffold_1277_curated_27
RBG_13_Planctomycetes_60_9_curated, Phycisphaerae, Planctomycetes, Bacteria

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comp(28761..31601)
DNA (2841bp) protein (947aa)
N-6 DNA methylase id=2932095 bin=GWF2_Planctomycete_41_51 species=Desulfococcus oleovorans genus=Desulfococcus taxon_order=Desulfobacterales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=GWF2_Planctomycete_41_51 organism_group=Planctomycetes organism_desc=a211
N-6 DNA methylase
Tax=RBG_13_Planctomycetes_60_9_curated
SCNpilot_cont_1000_p_scaffold_1277_curated_28
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(32219..32590)
DNA (372bp) protein (124aa)
Putative uncharacterized protein n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IMS7_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AHF94694.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
SCNpilot_cont_1000_p_scaffold_1277_curated_29
unknown

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comp(32657..32947)
DNA (291bp) protein (97aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1277_curated_30
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

Not on your lists

comp(32952..33701)
DNA (750bp) protein (250aa)
Putative uncharacterized protein n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IMS5_9BACT
Uncharacterized protein {ECO:0000313|EMBL:AHF94692.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
Displaying items 1-30 of 31 in total

View Taxonomy