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SCNpilot_cont_1000_p_scaffold_1631_curated

Search features with annotation key words

Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_1000_p_scaffold_1631_curated_1
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

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27..590
DNA (564bp) protein (188aa)
Regulatory protein TetR n=2 Tax=unclassified Opitutaceae RepID=H1IZ44_9BACT
TetR family transcriptional regulator {ECO:0000313|EMBL:AHF89917.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
TetR family transcriptional regulator
SCNpilot_cont_1000_p_scaffold_1631_curated_2
CG_Arma_01, Armatimonadetes, Bacteria

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711..2375
DNA (1665bp) protein (555aa)
Glycoside hydrolase family 5 n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IP86_9BACT
glycoside hydrolase family protein
Tax=CG_Arma_01
SCNpilot_cont_1000_p_scaffold_1631_curated_3
Pelosinus fermentans, Pelosinus, Selenomonadales, Negativicutes, Firmicutes, Bacteria

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comp(2398..2826)
DNA (429bp) protein (143aa)
Uncharacterized protein n=4 Tax=Pelosinus fermentans RepID=I8R9X8_9FIRM
Uncharacterized protein {ECO:0000313|EMBL:EIW15638.1}; TaxID=1149862 species="Bacteria; Firmicutes; Negativicutes; Selenomonadales; Veillonellaceae; Pelosinus.;" source="Pelosinus fermentans B4.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1631_curated_4
Opitutaceae bacterium TAV5, Opitutales, Opitutae, Verrucomicrobia, Bacteria

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comp(2829..4256)
DNA (1428bp) protein (476aa)
mannan endo-1,4-beta-mannosidase (EC:3.2.1.78)
Mannan endo-1,4-beta-mannosidase n=1 Tax=Opitutaceae bacterium TAV5 RepID=H1IP87_9BACT
Beta-mannanase {ECO:0000313|EMBL:AHF92327.1}; TaxID=794903 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae.;" source="Opitutaceae bacterium TAV5.;"
SCNpilot_cont_1000_p_scaffold_1631_curated_5
Rhodocyclaceae bacterium PG1-Ca6, Rhodocyclales, Betaproteobacteria, Proteobacteria, Bacteria

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4697..6877
DNA (2181bp) protein (727aa)
Catalase-peroxidase {ECO:0000256|HAMAP-Rule:MF_01961, ECO:0000256|RuleBase:RU003451}; Short=CP {ECO:0000256|HAMAP-Rule:MF_01961};; EC=1.11.1.21 {ECO:0000256|HAMAP-Rule:MF_01961, ECO:0000256|RuleBase:RU003451};; Peroxidase/catalase {ECO:0000256|HAMAP-Rule:MF_01961}; TaxID=1565605 species="Bacteria; Proteobacteria; Betaproteobacteria; Rhodocyclales; Rhodocyclaceae.;" source="Rhodocyclaceae bacterium PG1-Ca6.;"
catalase/peroxidase HPI; K03782 catalase-peroxidase [EC:1.11.1.21]
Catalase-peroxidase n=1 Tax=Dickeya dadantii (strain Ech586) RepID=D2BW53_DICD5
SCNpilot_cont_1000_p_scaffold_1631_curated_6
unknown

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7202..7363
DNA (162bp) protein (54aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1631_curated_7
unknown

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7462..7755
DNA (294bp) protein (98aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1631_curated_8
Pseudomonas aeruginosa, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(7742..9478)
DNA (1737bp) protein (579aa)
Uncharacterized protein n=6 Tax=Pseudomonas aeruginosa RepID=I1AFU4_PSEAI
Pseudomonas aeruginosa genome assembly PAE221 {ECO:0000313|EMBL:CEI77992.1}; TaxID=287 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas aeruginosa.;"
SCNpilot_cont_1000_p_scaffold_1631_curated_9
Opitutus terrae, Opitutus, Opitutales, Opitutae, Verrucomicrobia, Bacteria

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comp(9614..10594)
DNA (981bp) protein (327aa)
Uncharacterized protein n=1 Tax=Opitutus terrae (strain DSM 11246 / PB90-1) RepID=B1ZPS6_OPITP
hypothetical protein
Uncharacterized protein {ECO:0000313|EMBL:ACB75529.1}; TaxID=452637 species="Bacteria; Verrucomicrobia; Opitutae; Opitutales; Opitutaceae; Opitutus.;" source="Opitutus terrae (strain DSM 11246 / PB90-1).;"
SCNpilot_cont_1000_p_scaffold_1631_curated_10
unknown

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10768..11637
DNA (870bp) protein (290aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1631_curated_11
Verrucomicrobia bacterium IMCC26134, Verrucomicrobia, Bacteria

Not on your lists

comp(11770..12660)
DNA (891bp) protein (297aa)
Uncharacterized protein n=1 Tax=Methylibium petroleiphilum (strain PM1) RepID=A2SLX3_METPP
Uncharacterized protein {ECO:0000313|EMBL:AKC83501.1}; TaxID=1637999 species="Bacteria; Verrucomicrobia; unclassified Verrucomicrobia.;" source="Verrucomicrobia bacterium IMCC26134.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1631_curated_12
Yersinia enterocolitica, Yersinia, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(12858..13370)
DNA (513bp) protein (171aa)
hypothetical protein n=1 Tax=Yersinia enterocolitica RepID=UPI00030494D6
Uncharacterized protein {ECO:0000313|EMBL:AKF38625.1}; TaxID=630 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Yersinia.;" source="Yersinia enterocolitica.;"
hypothetical protein
SCNpilot_cont_1000_p_scaffold_1631_curated_13
unknown

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13754..14230
DNA (477bp) protein (159aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1631_curated_14

Not on your lists

comp(14512..15720)
DNA (1209bp) protein (403aa)
hypothetical protein n=1 Tax=Rubritalea marina RepID=UPI000362C2DD
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF49195.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein; K06919 putative DNA primase/helicase
SCNpilot_cont_1000_p_scaffold_1631_curated_15

Not on your lists

comp(15907..17301)
DNA (1395bp) protein (465aa)
hypothetical protein n=1 Tax=Verrucomicrobia bacterium SCGC AAA164-M04 RepID=UPI000372D64E
Uncultured bacterium genome assembly Metasoil_fosmids_resub {ECO:0000313|EMBL:CEF48709.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
SCNpilot_cont_1000_p_scaffold_1631_curated_16
unknown

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comp(17298..17549)
DNA (252bp) protein (84aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1631_curated_17
unknown

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17759..18379
DNA (621bp) protein (207aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1631_curated_18
RHI_Verrucumicrobia_41_10, Verrucomicrobiae, Verrucomicrobia, Bacteria

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comp(18793..20193)
DNA (1401bp) protein (467aa)
porin n=1 Tax=Verrucomicrobium spinosum RepID=UPI0001745AA7
carbohydrate-selective porin, OprB family; K07267 porin
Tax=RIFCSPHIGHO2_12_FULL_Verrucumicrobia_41_10_curated
SCNpilot_cont_1000_p_scaffold_1631_curated_19
unknown

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20617..20931
DNA (315bp) protein (105aa)

This feature has no annotations

SCNpilot_cont_1000_p_scaffold_1631_curated_20
unknown

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comp(20950..21084)
DNA (135bp) protein (45aa)

This feature has no annotations

Displaying 20 items

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