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SCNpilot_cont_300_bf_scaffold_5372_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_cont_300_bf_scaffold_5372_curated_1
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..406)
DNA (405bp) protein (135aa)
ATP-dependent Clp protease ATP-binding protein n=1 Tax=Caulobacter sp. JGI 0001013-D04 RepID=UPI00037B0041
ATP-dependent Clp protease ATP-binding subunit ClpA; K03694 ATP-dependent Clp protease ATP-binding subunit ClpA
ATP-dependent Clp protease, ATP-binding subunit clpA {ECO:0000313|EMBL:ADG11250.1}; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
SCNpilot_cont_300_bf_scaffold_5372_curated_2
RIFOXYA1_FULL_Brevundimonas_67_7_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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716..979
DNA (264bp) protein (88aa)
Tax=RIFOXYA1_FULL_Brevundimonas_67_7_curated
SCNpilot_cont_300_bf_scaffold_5372_curated_3
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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1842..2828
DNA (987bp) protein (329aa)
Uncharacterized protein {ECO:0000313|EMBL:AJP71305.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
Uncharacterized protein n=1 Tax=Sphingobium yanoikuyae ATCC 51230 RepID=K9CPI0_SPHYA rbh
hypothetical protein rbh
SCNpilot_cont_300_bf_scaffold_5372_curated_4
Sphingomonas sp. SKA58, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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2855..3883
DNA (1029bp) protein (343aa)
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase n=1 Tax=Sphingomonas sp. SKA58 RepID=Q1N887_9SPHN rbh
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase {ECO:0000313|EMBL:EAT07179.1}; EC=2.1.1.14 {ECO:0000313|EMBL:EAT07179.1};; TaxID=314266 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. (strain SKA58).;"
metE; 5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase rbh
SCNpilot_cont_300_bf_scaffold_5372_curated_5
Mycobacterium thermoresistibile, Mycobacterium, Corynebacteriales, Actinobacteria, Actinobacteria, Bacteria

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3886..4398
DNA (513bp) protein (171aa)
flavin reductase n=1 Tax=Pseudonocardia sp. P1 RepID=UPI0001FFDAE5
Flavin reductase {ECO:0000313|EMBL:EHI12703.1}; TaxID=1078020 species="Bacteria; Actinobacteria; Corynebacteriales; Mycobacteriaceae; Mycobacterium.;" source="Mycobacterium thermoresistibile ATCC 19527.;"
flavin reductase domain-containing FMN-binding protein
SCNpilot_cont_300_bf_scaffold_5372_curated_6
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4406..5641)
DNA (1236bp) protein (412aa)
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
dinP; DNA polymerase IV; K02346 DNA polymerase IV [EC:2.7.7.7] rbh
DNA polymerase IV n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4R948_PHEZH rbh
SCNpilot_cont_300_bf_scaffold_5372_curated_7
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5638..6543)
DNA (906bp) protein (302aa)
ROK family protein; K00847 fructokinase [EC:2.7.1.4] rbh
ROK family protein n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VL74_CAUST rbh
ROK family protein {ECO:0000313|EMBL:ADG11247.1}; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
SCNpilot_cont_300_bf_scaffold_5372_curated_8
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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6673..7038
DNA (366bp) protein (122aa)
response regulator receiver protein; K11443 two-component system, cell cycle response regulator DivK
Response regulator receiver protein n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T0I0_CAUSK
Response regulator receiver protein {ECO:0000313|EMBL:ABZ70626.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_cont_300_bf_scaffold_5372_curated_9
Caulobacter sp. AP07, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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7045..8409
DNA (1365bp) protein (455aa)
Diguanylate cyclase (GGDEF) domain-containing protein n=1 Tax=Caulobacter sp. AP07 RepID=J2G9M9_9CAUL rbh
Diguanylate cyclase (GGDEF) domain-containing protein {ECO:0000313|EMBL:EJL26485.1}; TaxID=1144304 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. AP07.;"
response regulator receiver modulated diguanylate cyclase; K02488 two-component system, cell cycle response regulator rbh
SCNpilot_cont_300_bf_scaffold_5372_curated_10
unknown

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8406..8729
DNA (324bp) protein (108aa)

This feature has no annotations

SCNpilot_cont_300_bf_scaffold_5372_curated_11
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8828..8995)
DNA (168bp) protein (56aa)
50S ribosomal protein L33; K02913 large subunit ribosomal protein L33
50S ribosomal protein L33 n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=RL33_PHEZH
50S ribosomal protein L33 {ECO:0000256|HAMAP-Rule:MF_00294}; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR37.;"
SCNpilot_cont_300_bf_scaffold_5372_curated_12
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9078..9521)
DNA (444bp) protein (148aa)
exoribonuclease, VacB and RNase II family; K12573 ribonuclease R [EC:3.1.-.-]
Ribonuclease R n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4R959_PHEZH
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_cont_300_bf_scaffold_5372_curated_13
R_Phenylobacterium_69_31, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9518..10180)
DNA (663bp) protein (221aa)
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_69_31_curated
VacB and RNase II family exoribonuclease; K12573 ribonuclease R [EC:3.1.-.-] rbh
Ribonuclease R n=2 Tax=Caulobacter crescentus (strain ATCC 19089 / CB15) RepID=B8GZL3_CAUCN rbh
Displaying 13 items

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