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SCNpilot_expt_1000_bf_scaffold_8251_curated

Search features with annotation key words

Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_8251_curated_1
R_Phenylobacterium_70_10, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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656..1231
DNA (576bp) protein (192aa)
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
ilvI; acetolactate synthase 3 catalytic subunit; K01652 acetolactate synthase I/II/III large subunit [EC:2.2.1.6] rbh
Acetolactate synthase n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RGS1_PHEZH rbh
SCNpilot_expt_1000_bf_scaffold_8251_curated_2
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1415..1738
DNA (324bp) protein (108aa)
acetolactate synthase small subunit; K01653 acetolactate synthase I/III small subunit [EC:2.2.1.6]
Acetolactate synthase, small subunit n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HVZ1_PARL1
Acetolactate synthase, small subunit {ECO:0000313|EMBL:ABS64074.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_8251_curated_3
Afipia felis, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1862..2878
DNA (1017bp) protein (339aa)
ketol-acid reductoisomerase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00037FBFF7 rbh
Ketol-acid reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427}; EC=1.1.1.86 {ECO:0000256|HAMAP-Rule:MF_00435, ECO:0000256|SAAS:SAAS00051427};; Acetohydroxy-acid isomeroreductase {ECO:0000256|HAMAP-Rule:MF_00435}; Alpha-keto-beta-hydroxylacyl reductoisomerase {ECO:0000256|HAMAP-Rule:MF_00435}; TaxID=883080 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia felis ATCC 53690.;"
ketol-acid reductoisomerase; K00053 ketol-acid reductoisomerase [EC:1.1.1.86] rbh
SCNpilot_expt_1000_bf_scaffold_8251_curated_4
Hoeflea sp. BRH_c9, Hoeflea, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3214..3537
DNA (324bp) protein (108aa)
Aldehyde-activating protein {ECO:0000313|EMBL:KJS15822.1}; TaxID=1629712 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Hoeflea.;" source="Hoeflea sp. BRH_c9.;"
SCNpilot_expt_1000_bf_scaffold_8251_curated_5
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

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3537..4727
DNA (1191bp) protein (397aa)
Phosphoribosylglycinamide formyltransferase 2 {ECO:0000256|HAMAP-Rule:MF_01643, ECO:0000256|SAAS:SAAS00083136}; Short=GART 2 {ECO:0000256|HAMAP-Rule:MF_01643};; EC=2.1.2.- {ECO:0000256|HAMAP-Rule:MF_01643, ECO:0000256|SAAS:SAAS00083135};; 5'-phosphoribosylglycinamide transformylase 2 {ECO:0000256|HAMAP-Rule:MF_01643}; Formate-dependent GAR transformylase {ECO:0000256|HAMAP-Rule:MF_01643}; GAR transformylase 2 {ECO:0000256|HAMAP-Rule:MF_01643}; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobact
phosphoribosylglycinamide formyltransferase; K08289 phosphoribosylglycinamide formyltransferase 2 [EC:2.1.2.2] rbh
Phosphoribosylglycinamide formyltransferase 2 n=1 Tax=Burkholderia sp. YI23 RepID=G8M6Q7_9BURK rbh
SCNpilot_expt_1000_bf_scaffold_8251_curated_6
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4989..6062
DNA (1074bp) protein (358aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
Signal transduction histidine kinase
Signal transduction histidine kinase n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TN42_TISMK
SCNpilot_expt_1000_bf_scaffold_8251_curated_7
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6147..7436)
DNA (1290bp) protein (430aa)
ABC transporter permease/ATPase; K02049 NitT/TauT family transport system ATP-binding protein rbh
ABC transporter nucleotide binding/ATPase protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IXD2_POLGS rbh
ABC transporter nucleotide binding/ATPase protein {ECO:0000313|EMBL:ADZ70450.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_expt_1000_bf_scaffold_8251_curated_8
Nitrosomonas eutropha, Nitrosomonas, Nitrosomonadales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(7441..7746)
DNA (306bp) protein (102aa)
binding-protein-dependent transport systems inner membrane component; K02050 NitT/TauT family transport system permease protein
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Nitrosomonas eutropha (strain C91) RepID=Q0ADE6_NITEC
Binding-protein-dependent transport systems inner membrane component {ECO:0000313|EMBL:ABI60636.1}; Flags: Precursor;; TaxID=335283 species="Bacteria; Proteobacteria; Betaproteobacteria; Nitrosomonadales; Nitrosomonadaceae; Nitrosomonas.;" source="Nitrosomonas eutropha (strain C91).;"
SCNpilot_expt_1000_bf_scaffold_8251_curated_9
unknown

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7958..8104
DNA (147bp) protein (49aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8251_curated_10
unknown

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8462..8671
DNA (210bp) protein (70aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8251_curated_11
Burkholderia ambifaria, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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8687..8881
DNA (195bp) protein (65aa)
Uncharacterized protein n=1 Tax=Burkholderia ambifaria IOP40-10 RepID=B1FR59_9BURK
Uncharacterized protein {ECO:0000313|EMBL:EDS99958.1}; TaxID=396596 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia; Burkholderia cepacia complex.;" source="Burkholderia ambifaria IOP40-10.;"
SCNpilot_expt_1000_bf_scaffold_8251_curated_12
alpha proteobacterium IMCC14465, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9793..11349
DNA (1557bp) protein (519aa)
2-isopropylmalate synthase n=1 Tax=alpha proteobacterium IMCC14465 RepID=J9DHN0_9PROT rbh
2-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_01025, ECO:0000256|SAAS:SAAS00049060}; EC=2.3.3.13 {ECO:0000256|HAMAP-Rule:MF_01025, ECO:0000256|SAAS:SAAS00085331};; Alpha-IPM synthase {ECO:0000256|HAMAP-Rule:MF_01025}; Alpha-isopropylmalate synthase {ECO:0000256|HAMAP-Rule:MF_01025}; TaxID=1220535 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium IMCC14465.;"
2-isopropylmalate synthase rbh
SCNpilot_expt_1000_bf_scaffold_8251_curated_13
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11505..12548
DNA (1044bp) protein (348aa)
rod shape-determining protein MreB; K03569 rod shape-determining protein MreB and related proteins rbh
Cell shape determining protein, MreB/Mrl family n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HW05_PARL1 rbh
Cell shape determining protein, MreB/Mrl family {ECO:0000313|EMBL:ABS64088.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_8251_curated_14
unknown

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comp(13068..13235)
DNA (168bp) protein (56aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8251_curated_15
unknown

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comp(13239..13451)
DNA (213bp) protein (71aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8251_curated_16
R_Alphaproteobacteria_63_12, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13537..14100
DNA (564bp) protein (188aa)
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_63_12_curated
Uncharacterized protein n=1 Tax=Caulobacter crescentus OR37 RepID=R0EB34_CAUCE
Cell shape-determining protein
SCNpilot_expt_1000_bf_scaffold_8251_curated_17
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14182..16041
DNA (1860bp) protein (620aa)
Peptidoglycan glycosyltransferase {ECO:0000313|EMBL:GAK44819.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
peptidoglycan glycosyltransferase; K05515 penicillin-binding protein 2 rbh
Peptidoglycan glycosyltransferase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HW08_PARL1 rbh
SCNpilot_expt_1000_bf_scaffold_8251_curated_18
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16282..16656
DNA (375bp) protein (125aa)
Cell wall shape-determining protein {ECO:0000313|EMBL:KJB96403.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
rod shape-determining protein RodA; K05837 rod shape determining protein RodA
Rod shape-determining protein RodA n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HW09_PARL1
Displaying 18 items

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