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SCNpilot_expt_1000_bf_scaffold_6204_curated

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Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6204_curated_1
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(69..455)
DNA (387bp) protein (129aa)
Response regulator {ECO:0000313|EMBL:CDO58990.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
response regulator receiver protein; K13589 two-component system, cell cycle response regulator CpdR
Response regulator receiver protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HUM9_PARL1
SCNpilot_expt_1000_bf_scaffold_6204_curated_2
Caenispirillum salinarum, Caenispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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595..1485
DNA (891bp) protein (297aa)
N-formylglutamate deformylase n=1 Tax=Caenispirillum salinarum AK4 RepID=K9H0B4_9PROT
N-formylglutamate deformylase {ECO:0000313|EMBL:EKV30499.1}; TaxID=1238182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirillum salinarum AK4.;"
hydrolase
SCNpilot_expt_1000_bf_scaffold_6204_curated_3
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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2046..2972
DNA (927bp) protein (309aa)
Ser/Thr protein phosphatase family protein,UDP-2,3-diacylglucosamine hydrolase homolog {ECO:0000313|EMBL:CDO58995.1}; EC=3.6.1.54 {ECO:0000313|EMBL:CDO58995.1};; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
metallophosphoesterase rbh
Metallophosphoesterase n=1 Tax=Acidovorax sp. (strain JS42) RepID=A1W5B0_ACISJ rbh
SCNpilot_expt_1000_bf_scaffold_6204_curated_4
Methylibium sp. T29-B, Methylibium, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(2800..3465)
DNA (666bp) protein (222aa)
hypothetical protein
hypothetical protein SMAC_10660, partial n=1 Tax=Sordaria macrospora (strain ATCC MYA-333 / DSM 997 / K(L3346) / K-hell) RepID=UPI0001BF5ABD
Uncharacterized protein {ECO:0000313|EMBL:EWS58332.1}; TaxID=1437443 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Methylibium.;" source="Methylibium sp. T29-B.;"
SCNpilot_expt_1000_bf_scaffold_6204_curated_5
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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4148..5749
DNA (1602bp) protein (534aa)
Uncharacterized protein {ECO:0000313|EMBL:EWY40360.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
Putative uncharacterized protein n=1 Tax=Azospirillum amazonense Y2 RepID=G1Y1K9_9PROT rbh
conserved membrane protein of unknown function rbh
SCNpilot_expt_1000_bf_scaffold_6204_curated_6
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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5762..6700
DNA (939bp) protein (313aa)
family 2 glycosyl transferase rbh
Glycosyl transferase family 2 n=1 Tax=Azospirillum sp. (strain B510) RepID=D3NSZ6_AZOS1 rbh
Glycosyl transferase family 2 {ECO:0000313|EMBL:BAI71525.1}; TaxID=137722 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum sp. (strain B510).;"
SCNpilot_expt_1000_bf_scaffold_6204_curated_7
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6697..7116
DNA (420bp) protein (140aa)
hypothetical protein n=1 Tax=Methyloversatilis sp. NVD RepID=UPI00037ED588
Uncharacterized protein {ECO:0000313|EMBL:EWY40362.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
GtrA family protein
SCNpilot_expt_1000_bf_scaffold_6204_curated_8
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7113..8729
DNA (1617bp) protein (539aa)
Uncharacterized protein {ECO:0000313|EMBL:CDO58360.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
hypothetical protein rbh
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HWJ7_PARL1 rbh
SCNpilot_expt_1000_bf_scaffold_6204_curated_9
Burkholderia xenovorans, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(8771..9886)
DNA (1116bp) protein (372aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Burkholderia xenovorans (strain LB400) RepID=Q13HZ7_BURXL
Uncharacterized protein {ECO:0000313|EMBL:ABE36292.1}; TaxID=266265 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia xenovorans (strain LB400).;"
SCNpilot_expt_1000_bf_scaffold_6204_curated_10
R_Betaproteobacteria_66_14, Betaproteobacteria, Proteobacteria, Bacteria

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comp(10422..10877)
DNA (456bp) protein (152aa)
Tax=RIFCSPLOWO2_02_FULL_Betaproteobacteria_66_14_curated
exbD; biopolymer transport protein ExbD; K03559 biopolymer transport protein ExbD
Biopolymer transport protein ExbD n=1 Tax=Rubrivivax gelatinosus (strain NBRC 100245 / IL144) RepID=I0HUU1_RUBGI
SCNpilot_expt_1000_bf_scaffold_6204_curated_11
Magnetospirillum sp. SO-1, Magnetospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10910..11050)
DNA (141bp) protein (47aa)
Biopolymer transport protein n=1 Tax=Magnetospirillum sp. SO-1 RepID=M2Z7F9_9PROT
Biopolymer transport protein {ECO:0000313|EMBL:EME70255.1}; TaxID=1244869 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Magnetospirillum.;" source="Magnetospirillum sp. SO-1.;"
MotA/TolQ/ExbB proton channel; K03561 biopolymer transport protein ExbB
SCNpilot_expt_1000_bf_scaffold_6204_curated_12
Massilia sp. LC238, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(11061..11741)
DNA (681bp) protein (227aa)
Biopolymer transport protein ExbB {ECO:0000313|EMBL:KFC65691.1}; TaxID=1502852 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. LC238.;"
Biopolymer transport protein n=1 Tax=Burkholderiales bacterium JOSHI_001 RepID=H5WLE8_9BURK
Biopolymer transport exbB protein, putative
SCNpilot_expt_1000_bf_scaffold_6204_curated_13
Hydrocarboniphaga effusa, Hydrocarboniphaga, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11782..12414)
DNA (633bp) protein (211aa)
Uncharacterized protein n=1 Tax=Hydrocarboniphaga effusa AP103 RepID=I7ZA79_9GAMM
Uncharacterized protein {ECO:0000313|EMBL:EIT68764.1}; TaxID=1172194 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Sinobacteraceae; Hydrocarboniphaga.;" source="Hydrocarboniphaga effusa AP103.;"
tonB; protein TonB; K03832 periplasmic protein TonB
SCNpilot_expt_1000_bf_scaffold_6204_curated_14
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12939..13397
DNA (459bp) protein (153aa)
Lactoylglutathione lyase {ECO:0000313|EMBL:GAM98512.1}; EC=4.4.1.5 {ECO:0000313|EMBL:GAM98512.1};; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
glyoxalase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F70CBA
glyoxalase/bleomycin resistance protein/dioxygenase; K01759 lactoylglutathione lyase [EC:4.4.1.5]
SCNpilot_expt_1000_bf_scaffold_6204_curated_15
unknown

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comp(13458..15419)
DNA (1962bp) protein (654aa)

This feature has no annotations

Displaying 15 items

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