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SCNpilot_expt_1000_bf_scaffold_7003_curated

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Displaying 6 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_7003_curated_1
Agrobacterium rubi, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..542)
DNA (540bp) protein (180aa)
GDP-L-fucose synthase {ECO:0000256|HAMAP-Rule:MF_00956}; EC=1.1.1.271 {ECO:0000256|HAMAP-Rule:MF_00956};; GDP-4-keto-6-deoxy-D-mannose-3,5-epimerase-4-reductase {ECO:0000256|HAMAP-Rule:MF_00956}; TaxID=1220582 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Rhizobium rubi NBRC 13261.;"
GDP-L-fucose synthase n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WEX8_9CAUL
NAD-dependent epimerase/dehydratase; K02377 GDP-L-fucose synthase [EC:1.1.1.271]
SCNpilot_expt_1000_bf_scaffold_7003_curated_2
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(824..1885)
DNA (1062bp) protein (354aa)
GDP-mannose 4,6-dehydratase n=1 Tax=Caenispirillum salinarum AK4 RepID=K9GLI1_9PROT rbh
GDP-mannose 4,6-dehydratase {ECO:0000256|HAMAP-Rule:MF_00955}; EC=4.2.1.47 {ECO:0000256|HAMAP-Rule:MF_00955};; GDP-D-mannose dehydratase {ECO:0000256|HAMAP-Rule:MF_00955}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
gmd; GDP-mannose 4,6-dehydratase (EC:4.2.1.47); K01711 GDPmannose 4,6-dehydratase [EC:4.2.1.47] rbh
SCNpilot_expt_1000_bf_scaffold_7003_curated_3
Rhodospirillum rubrum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1882..3180)
DNA (1299bp) protein (433aa)
UDP-glucose 6-dehydrogenase (EC:1.1.1.22); K00012 UDPglucose 6-dehydrogenase [EC:1.1.1.22] rbh
UDP-glucose 6-dehydrogenase n=2 Tax=Rhodospirillum rubrum RepID=G2TCK2_RHORU rbh
UDP-glucose 6-dehydrogenase {ECO:0000313|EMBL:ABC22916.1}; EC=1.1.1.22 {ECO:0000313|EMBL:ABC22916.1};; TaxID=269796 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG; 4362 / NCIB 8255 / S1).;"
SCNpilot_expt_1000_bf_scaffold_7003_curated_4
Collimonas fungivorans, Collimonas, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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3295..4218
DNA (924bp) protein (308aa)
gldA; ABC transporter-like protein (EC:3.6.3.25)
ABC transporter related protein n=1 Tax=Collimonas fungivorans (strain Ter331) RepID=G0ACH7_COLFT
ABC transporter related protein {ECO:0000313|EMBL:AEK62772.1}; EC=3.6.3.25 {ECO:0000313|EMBL:AEK62772.1};; TaxID=1005048 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Collimonas.;" source="Collimonas fungivorans (strain Ter331).;"
SCNpilot_expt_1000_bf_scaffold_7003_curated_5
GWD2_Desulfuromonadales_61_12_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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4215..5546
DNA (1332bp) protein (444aa)
Tax=GWD2_Desulfuromonadales_61_12_curated
hypothetical protein
Putative uncharacterized protein n=1 Tax=Geobacter sp. (strain M18) RepID=E8WPK9_GEOS8
SCNpilot_expt_1000_bf_scaffold_7003_curated_6
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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5615..6577
DNA (963bp) protein (321aa)
Polysaccharide biosynthesis protein CapD n=1 Tax=Oceanibaculum indicum P24 RepID=K2J455_9PROT rbh
Polysaccharide biosynthesis protein CapD {ECO:0000313|EMBL:EKE69858.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
polysaccharide biosynthesis protein CapD rbh
Displaying 6 items

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