name | lists | location/seqs | annotations | notes |
---|---|---|---|---|
SCNpilot_expt_1000_bf_scaffold_4508_curated_1
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
2..211
|
hypothetical protein
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HX80_PARL1
Uncharacterized protein {ECO:0000313|EMBL:ABS64513.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
|
|
SCNpilot_expt_1000_bf_scaffold_4508_curated_2
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(533..1012)
|
MucR family transcriptional regulator {ECO:0000313|EMBL:EWY39182.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
transcriptional regulator
Transcriptional regulatory protein n=1 Tax=Azospirillum sp. (strain B510) RepID=D3NTB6_AZOS1
|
|
SCNpilot_expt_1000_bf_scaffold_4508_curated_3
Methylobacterium sp. GXF4, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
1559..2548
|
Serine hydroxymethyltransferase n=1 Tax=Methylobacterium sp. GXF4 RepID=I9WZN0_9RHIZ
rbh
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=1096546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. GXF4.;"
glyA; serine hydroxymethyltransferase (EC:2.1.2.1); K00600 glycine hydroxymethyltransferase [EC:2.1.2.1]
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_4508_curated_4
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
2556..3215
|
hypothetical protein; K09765 hypothetical protein
rbh
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JGZ3_OLICO
rbh
Uncharacterized protein {ECO:0000313|EMBL:AEI06038.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
|
|
SCNpilot_expt_1000_bf_scaffold_4508_curated_5
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
3225..3686
|
ATP-cone domain-containing protein; K07738 transcriptional repressor NrdR
Transcriptional repressor NrdR n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=NRDR_PARL1
Transcriptional repressor NrdR {ECO:0000255|HAMAP-Rule:MF_00440}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
|
|
SCNpilot_expt_1000_bf_scaffold_4508_curated_6
unknown
|
Not on your lists |
3686..3811
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_4508_curated_7
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
3808..4224
|
6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0GZR5_9SPHN
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795};; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
ribH; 6,7-dimethyl-8-ribityllumazine synthase
|
|
SCNpilot_expt_1000_bf_scaffold_4508_curated_8
Maricaulis maris, Maricaulis, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
4221..4709
|
nusB; transcription antitermination protein NusB; K03625 N utilization substance protein B
N utilization substance protein B homolog n=1 Tax=Maricaulis maris (strain MCS10) RepID=NUSB_MARMM
N utilization substance protein B homolog {ECO:0000255|HAMAP-Rule:MF_00073}; Short=Protein NusB {ECO:0000255|HAMAP-Rule:MF_00073};; TaxID=394221 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Maricaulis.;" source="Maricaulis maris (strain MCS10).;"
|
|
SCNpilot_expt_1000_bf_scaffold_4508_curated_9
unknown
|
Not on your lists |
4814..4987
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_4508_curated_10
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
5019..5915
|
Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0J4I5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB32861.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
|
|
SCNpilot_expt_1000_bf_scaffold_4508_curated_11
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
6063..6986
|
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
thiamine-monophosphate kinase; K00946 thiamine-monophosphate kinase [EC:2.7.4.16]
Thiamine-monophosphate kinase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HX89_PARL1
|
|
SCNpilot_expt_1000_bf_scaffold_4508_curated_12
unknown
|
Not on your lists |
7134..7646
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_4508_curated_13
Parcubacteria bacterium GW2011_GWA1_60_11, Parcubacteria, Bacteria
|
Not on your lists |
8173..9966
|
K(+)-insensitive pyrophosphate-energized proton pump {ECO:0000313|EMBL:KKW47289.1}; TaxID=1618805 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA1_60_11.;"
membrane-bound proton-translocating pyrophosphatase; K15987 K(+)-stimulated pyrophosphate-energized sodium pump [EC:3.6.1.1]
rbh
K(+)-insensitive pyrophosphate-energized proton pump n=2 Tax=Pseudovibrio RepID=G8PLK2_PSEUV
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_4508_curated_14
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(10222..10806)
|
Outer membrane lipoprotein OmlA {ECO:0000313|EMBL:CDO61339.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
hypothetical protein
Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9TJ50_RICCO
|
|
SCNpilot_expt_1000_bf_scaffold_4508_curated_15
Scytonema millei, Scytonema, Nostocales, Cyanobacteria, Bacteria
|
Not on your lists |
10895..11395
|
Uncharacterized protein {ECO:0000313|EMBL:KIF25879.1}; TaxID=1245923 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema millei VB511283.;"
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000363EA60
hypothetical protein
|
|
SCNpilot_expt_1000_bf_scaffold_4508_curated_16
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
11402..11941
|
hypothetical protein
Uncharacterized protein n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J260_ACIMA
Uncharacterized protein {ECO:0000313|EMBL:BAJ79646.1}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
|
|
SCNpilot_expt_1000_bf_scaffold_4508_curated_17
Zymomonas mobilis, Zymomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
12059..12238
|
50S ribosomal protein L32; K02911 large subunit ribosomal protein L32
50S ribosomal protein L32 n=1 Tax=Zymomonas mobilis subsp. pomaceae (strain ATCC 29192 / JCM 10191 / NBRC 13757 / NCIMB 11200 / NRRL B-4491) RepID=F8EU95_ZYMMT
50S ribosomal protein L32 {ECO:0000256|HAMAP-Rule:MF_00340}; TaxID=579138 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Zymomonas.;" source="Zymomonas mobilis subsp. pomaceae (strain ATCC 29192 / JCM 10191 /; NBRC 13757 / NCIMB 11200 / NRRL B-4491).;"
|
|
SCNpilot_expt_1000_bf_scaffold_4508_curated_18
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
12264..13310
|
fatty acid/phospholipid synthesis protein PlsX; K03621 glycerol-3-phosphate acyltransferase PlsX [EC:2.3.1.15]
rbh
Phosphate acyltransferase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=PLSX_PARL1
rbh
Phosphate acyltransferase {ECO:0000255|HAMAP-Rule:MF_00019}; EC=2.3.1.n2 {ECO:0000255|HAMAP-Rule:MF_00019};; Acyl-ACP phosphotransacylase {ECO:0000255|HAMAP-Rule:MF_00019}; Acyl-[acyl-carrier-protein]--phosphate acyltransferase {ECO:0000255|HAMAP-Rule:MF_00019}; Phosphate-acyl-ACP acyltransferase {ECO:0000255|HAMAP-Rule:MF_00019}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCI
|
|
SCNpilot_expt_1000_bf_scaffold_4508_curated_19
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
13335..14306
|
3-oxoacyl-[acyl-carrier-protein] synthase 3 n=1 Tax=Azospirillum amazonense Y2 RepID=G1Y0K9_9PROT
rbh
3-oxoacyl-[acyl-carrier-protein] synthase 3 {ECO:0000256|HAMAP-Rule:MF_01815}; EC=2.3.1.180 {ECO:0000256|HAMAP-Rule:MF_01815};; 3-oxoacyl-[acyl-carrier-protein] synthase III {ECO:0000256|HAMAP-Rule:MF_01815}; Beta-ketoacyl-ACP synthase III {ECO:0000256|HAMAP-Rule:MF_01815}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
fabH; 3-oxoacyl-ACP synthase (EC:2.3.1.41); K00648 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180]
rbh
|
|
SCNpilot_expt_1000_bf_scaffold_4508_curated_20
bacterium YEK0313, Bacteria
|
Not on your lists |
14460..14777
|
Integration host factor subunit alpha {ECO:0000256|HAMAP-Rule:MF_00380, ECO:0000256|RuleBase:RU004485}; Short=IHF-alpha {ECO:0000256|HAMAP-Rule:MF_00380};; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
Integration host factor subunit alpha n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z0A5_9RHIZ
ihfA; integration host factor subunit alpha; K04764 integration host factor subunit alpha
|
|
SCNpilot_expt_1000_bf_scaffold_4508_curated_21
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
14778..15383
|
transcriptional regulator, MerR family
Transcriptional regulator, MerR family n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6H3_PELHB
Transcriptional regulator, MerR family {ECO:0000313|EMBL:AEQ51169.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
|
|
SCNpilot_expt_1000_bf_scaffold_4508_curated_trna_1
unknown
|
Not on your lists |
15493..15566
|
transferRNA
|
|
SCNpilot_expt_1000_bf_scaffold_4508_curated_22
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
15716..16096
|
Rickettsia 17 kDa surface antigen family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WUG2_9SPHN
DNA, contig: SP649 {ECO:0000313|EMBL:GAN14974.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
17 kDa surface antigen
|
|
SCNpilot_expt_1000_bf_scaffold_4508_curated_23
unknown
|
Not on your lists |
comp(16131..16481)
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_4508_curated_24
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
comp(16481..16759)
|
Acetyltransferase {ECO:0000313|EMBL:KJB95436.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
Uncharacterized protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QH07_BREDI
acetyltransferase-like protein; K06975
|
|
SCNpilot_expt_1000_bf_scaffold_4508_curated_25
unknown
|
Not on your lists |
comp(16756..16989)
|
This feature has no annotations |
|
SCNpilot_expt_1000_bf_scaffold_4508_curated_26
Pseudovibrio sp. JE062, Pseudovibrio, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria
|
Not on your lists |
17125..17427
|
Cytochrome oxidase assembly; K02259 cytochrome c oxidase assembly protein subunit 15
Heme A synthase n=1 Tax=Pseudovibrio sp. JE062 RepID=B6QXA1_9RHOB
Heme A synthase {ECO:0000256|HAMAP-Rule:MF_01665}; Short=HAS {ECO:0000256|HAMAP-Rule:MF_01665};; EC=1.3.-.- {ECO:0000256|HAMAP-Rule:MF_01665};; Cytochrome aa3-controlling protein {ECO:0000256|HAMAP-Rule:MF_01665}; TaxID=439495 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pseudovibrio.;" source="Pseudovibrio sp. JE062.;"
|