ggKbase home page

SCNpilot_expt_1000_bf_scaffold_4508_curated

Search features with annotation key words

Displaying 27 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4508_curated_1
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..211
DNA (210bp) protein (70aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HX80_PARL1
Uncharacterized protein {ECO:0000313|EMBL:ABS64513.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_4508_curated_2
Skermanella stibiiresistens, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(533..1012)
DNA (480bp) protein (160aa)
MucR family transcriptional regulator {ECO:0000313|EMBL:EWY39182.1}; TaxID=1385369 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella stibiiresistens SB22.;"
transcriptional regulator
Transcriptional regulatory protein n=1 Tax=Azospirillum sp. (strain B510) RepID=D3NTB6_AZOS1
SCNpilot_expt_1000_bf_scaffold_4508_curated_3
Methylobacterium sp. GXF4, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1559..2548
DNA (990bp) protein (330aa)
Serine hydroxymethyltransferase n=1 Tax=Methylobacterium sp. GXF4 RepID=I9WZN0_9RHIZ rbh
Serine hydroxymethyltransferase {ECO:0000256|HAMAP-Rule:MF_00051}; Short=SHMT {ECO:0000256|HAMAP-Rule:MF_00051};; Short=Serine methylase {ECO:0000256|HAMAP-Rule:MF_00051};; EC=2.1.2.1 {ECO:0000256|HAMAP-Rule:MF_00051};; TaxID=1096546 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. GXF4.;"
glyA; serine hydroxymethyltransferase (EC:2.1.2.1); K00600 glycine hydroxymethyltransferase [EC:2.1.2.1] rbh
SCNpilot_expt_1000_bf_scaffold_4508_curated_4
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2556..3215
DNA (660bp) protein (220aa)
hypothetical protein; K09765 hypothetical protein rbh
Uncharacterized protein n=2 Tax=Oligotropha carboxidovorans RepID=B6JGZ3_OLICO rbh
Uncharacterized protein {ECO:0000313|EMBL:AEI06038.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
SCNpilot_expt_1000_bf_scaffold_4508_curated_5
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3225..3686
DNA (462bp) protein (154aa)
ATP-cone domain-containing protein; K07738 transcriptional repressor NrdR
Transcriptional repressor NrdR n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=NRDR_PARL1
Transcriptional repressor NrdR {ECO:0000255|HAMAP-Rule:MF_00440}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_4508_curated_6
unknown

Not on your lists

3686..3811
DNA (126bp) protein (42aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4508_curated_7
Sphingobium quisquiliarum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3808..4224
DNA (417bp) protein (139aa)
6,7-dimethyl-8-ribityllumazine synthase n=1 Tax=Sphingobium quisquiliarum P25 RepID=T0GZR5_9SPHN
6,7-dimethyl-8-ribityllumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795}; Short=DMRL synthase {ECO:0000256|HAMAP-Rule:MF_00178};; Short=LS {ECO:0000256|HAMAP-Rule:MF_00178};; Short=Lumazine synthase {ECO:0000256|HAMAP-Rule:MF_00178};; EC=2.5.1.78 {ECO:0000256|HAMAP-Rule:MF_00178, ECO:0000256|RuleBase:RU003795};; TaxID=1329909 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium quisquiliarum P25.;"
ribH; 6,7-dimethyl-8-ribityllumazine synthase
SCNpilot_expt_1000_bf_scaffold_4508_curated_8
Maricaulis maris, Maricaulis, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4221..4709
DNA (489bp) protein (163aa)
nusB; transcription antitermination protein NusB; K03625 N utilization substance protein B
N utilization substance protein B homolog n=1 Tax=Maricaulis maris (strain MCS10) RepID=NUSB_MARMM
N utilization substance protein B homolog {ECO:0000255|HAMAP-Rule:MF_00073}; Short=Protein NusB {ECO:0000255|HAMAP-Rule:MF_00073};; TaxID=394221 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Maricaulis.;" source="Maricaulis maris (strain MCS10).;"
SCNpilot_expt_1000_bf_scaffold_4508_curated_9
unknown

Not on your lists

4814..4987
DNA (174bp) protein (58aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4508_curated_10
Sphingobium ummariense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5019..5915
DNA (897bp) protein (299aa)
Uncharacterized protein n=1 Tax=Sphingobium ummariense RL-3 RepID=T0J4I5_9SPHN
Uncharacterized protein {ECO:0000313|EMBL:EQB32861.1}; TaxID=1346791 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium ummariense RL-3.;"
SCNpilot_expt_1000_bf_scaffold_4508_curated_11
RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

6063..6986
DNA (924bp) protein (308aa)
Tax=RIFCSPLOWO2_12_FULL_Betaproteobacteria_65_14_curated
thiamine-monophosphate kinase; K00946 thiamine-monophosphate kinase [EC:2.7.4.16]
Thiamine-monophosphate kinase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HX89_PARL1
SCNpilot_expt_1000_bf_scaffold_4508_curated_12
unknown

Not on your lists

7134..7646
DNA (513bp) protein (171aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4508_curated_13

Not on your lists

8173..9966
DNA (1794bp) protein (598aa)
K(+)-insensitive pyrophosphate-energized proton pump {ECO:0000313|EMBL:KKW47289.1}; TaxID=1618805 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA1_60_11.;"
membrane-bound proton-translocating pyrophosphatase; K15987 K(+)-stimulated pyrophosphate-energized sodium pump [EC:3.6.1.1] rbh
K(+)-insensitive pyrophosphate-energized proton pump n=2 Tax=Pseudovibrio RepID=G8PLK2_PSEUV rbh
SCNpilot_expt_1000_bf_scaffold_4508_curated_14
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10222..10806)
DNA (585bp) protein (195aa)
Outer membrane lipoprotein OmlA {ECO:0000313|EMBL:CDO61339.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
hypothetical protein
Putative uncharacterized protein n=1 Tax=Ricinus communis RepID=B9TJ50_RICCO
SCNpilot_expt_1000_bf_scaffold_4508_curated_15
Scytonema millei, Scytonema, Nostocales, Cyanobacteria, Bacteria

Not on your lists

10895..11395
DNA (501bp) protein (167aa)
Uncharacterized protein {ECO:0000313|EMBL:KIF25879.1}; TaxID=1245923 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema millei VB511283.;"
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI000363EA60
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4508_curated_16
Acidiphilium multivorum, Acidiphilium, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11402..11941
DNA (540bp) protein (180aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / AIU301) RepID=F0J260_ACIMA
Uncharacterized protein {ECO:0000313|EMBL:BAJ79646.1}; TaxID=926570 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidiphilium.;" source="Acidiphilium multivorum (strain DSM 11245 / JCM 8867 / NBRC 100883 /; AIU301).;"
SCNpilot_expt_1000_bf_scaffold_4508_curated_17
Zymomonas mobilis, Zymomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


12059..12238
DNA (180bp) protein (60aa)
50S ribosomal protein L32; K02911 large subunit ribosomal protein L32
50S ribosomal protein L32 n=1 Tax=Zymomonas mobilis subsp. pomaceae (strain ATCC 29192 / JCM 10191 / NBRC 13757 / NCIMB 11200 / NRRL B-4491) RepID=F8EU95_ZYMMT
50S ribosomal protein L32 {ECO:0000256|HAMAP-Rule:MF_00340}; TaxID=579138 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Zymomonas.;" source="Zymomonas mobilis subsp. pomaceae (strain ATCC 29192 / JCM 10191 /; NBRC 13757 / NCIMB 11200 / NRRL B-4491).;"
SCNpilot_expt_1000_bf_scaffold_4508_curated_18
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12264..13310
DNA (1047bp) protein (349aa)
fatty acid/phospholipid synthesis protein PlsX; K03621 glycerol-3-phosphate acyltransferase PlsX [EC:2.3.1.15] rbh
Phosphate acyltransferase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=PLSX_PARL1 rbh
Phosphate acyltransferase {ECO:0000255|HAMAP-Rule:MF_00019}; EC=2.3.1.n2 {ECO:0000255|HAMAP-Rule:MF_00019};; Acyl-ACP phosphotransacylase {ECO:0000255|HAMAP-Rule:MF_00019}; Acyl-[acyl-carrier-protein]--phosphate acyltransferase {ECO:0000255|HAMAP-Rule:MF_00019}; Phosphate-acyl-ACP acyltransferase {ECO:0000255|HAMAP-Rule:MF_00019}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCI
SCNpilot_expt_1000_bf_scaffold_4508_curated_19
Nitrospirillum amazonense, Nitrospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13335..14306
DNA (972bp) protein (324aa)
3-oxoacyl-[acyl-carrier-protein] synthase 3 n=1 Tax=Azospirillum amazonense Y2 RepID=G1Y0K9_9PROT rbh
3-oxoacyl-[acyl-carrier-protein] synthase 3 {ECO:0000256|HAMAP-Rule:MF_01815}; EC=2.3.1.180 {ECO:0000256|HAMAP-Rule:MF_01815};; 3-oxoacyl-[acyl-carrier-protein] synthase III {ECO:0000256|HAMAP-Rule:MF_01815}; Beta-ketoacyl-ACP synthase III {ECO:0000256|HAMAP-Rule:MF_01815}; TaxID=1003237 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Nitrospirillum.;" source="Nitrospirillum amazonense Y2.;"
fabH; 3-oxoacyl-ACP synthase (EC:2.3.1.41); K00648 3-oxoacyl-[acyl-carrier-protein] synthase III [EC:2.3.1.180] rbh
SCNpilot_expt_1000_bf_scaffold_4508_curated_20
bacterium YEK0313, Bacteria

Not on your lists

14460..14777
DNA (318bp) protein (106aa)
Integration host factor subunit alpha {ECO:0000256|HAMAP-Rule:MF_00380, ECO:0000256|RuleBase:RU004485}; Short=IHF-alpha {ECO:0000256|HAMAP-Rule:MF_00380};; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
Integration host factor subunit alpha n=1 Tax=Microvirga sp. WSM3557 RepID=I4Z0A5_9RHIZ
ihfA; integration host factor subunit alpha; K04764 integration host factor subunit alpha
SCNpilot_expt_1000_bf_scaffold_4508_curated_21
Pelagibacterium halotolerans, Pelagibacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14778..15383
DNA (606bp) protein (202aa)
transcriptional regulator, MerR family
Transcriptional regulator, MerR family n=1 Tax=Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2) RepID=G4R6H3_PELHB
Transcriptional regulator, MerR family {ECO:0000313|EMBL:AEQ51169.1}; TaxID=1082931 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Pelagibacterium.;" source="Pelagibacterium halotolerans (strain JCM 15775 / CGMCC 1.7692 / B2).;"
SCNpilot_expt_1000_bf_scaffold_4508_curated_trna_1
unknown

Not on your lists

15493..15566
DNA (74bp)
transferRNA
SCNpilot_expt_1000_bf_scaffold_4508_curated_22
Sphingomonas paucimobilis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15716..16096
DNA (381bp) protein (127aa)
Rickettsia 17 kDa surface antigen family protein n=1 Tax=Sphingomonas sp. S17 RepID=F3WUG2_9SPHN
DNA, contig: SP649 {ECO:0000313|EMBL:GAN14974.1}; TaxID=1219050 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas paucimobilis NBRC 13935.;"
17 kDa surface antigen
SCNpilot_expt_1000_bf_scaffold_4508_curated_23
unknown

Not on your lists

comp(16131..16481)
DNA (351bp) protein (117aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4508_curated_24
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16481..16759)
DNA (279bp) protein (93aa)
Acetyltransferase {ECO:0000313|EMBL:KJB95436.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
Uncharacterized protein n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QH07_BREDI
acetyltransferase-like protein; K06975
SCNpilot_expt_1000_bf_scaffold_4508_curated_25
unknown

Not on your lists

comp(16756..16989)
DNA (234bp) protein (78aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4508_curated_26
Pseudovibrio sp. JE062, Pseudovibrio, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17125..17427
DNA (303bp) protein (101aa)
Cytochrome oxidase assembly; K02259 cytochrome c oxidase assembly protein subunit 15
Heme A synthase n=1 Tax=Pseudovibrio sp. JE062 RepID=B6QXA1_9RHOB
Heme A synthase {ECO:0000256|HAMAP-Rule:MF_01665}; Short=HAS {ECO:0000256|HAMAP-Rule:MF_01665};; EC=1.3.-.- {ECO:0000256|HAMAP-Rule:MF_01665};; Cytochrome aa3-controlling protein {ECO:0000256|HAMAP-Rule:MF_01665}; TaxID=439495 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Pseudovibrio.;" source="Pseudovibrio sp. JE062.;"
Displaying 27 items

View Taxonomy