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SCNpilot_expt_1000_bf_scaffold_6985_curated

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6985_curated_1
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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2..1909
DNA (1908bp) protein (636aa)
Lytic transglycosylase catalytic|GH23 {ECO:0000313|EMBL:CDO61400.1}; EC=4.2.2.- {ECO:0000313|EMBL:CDO61400.1};; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
lytic transglycosylase catalytic subunit; K08309 soluble lytic murein transglycosylase [EC:3.2.1.-] rbh
Lytic transglycosylase catalytic n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HX35_PARL1 rbh
SCNpilot_expt_1000_bf_scaffold_6985_curated_2
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1913..2185)
DNA (273bp) protein (91aa)
Sel1 domain-containing protein {ECO:0000313|EMBL:GAK44179.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
Sel1 domain-containing protein; K07126
Sel1 domain protein repeat-containing protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HX23_PARL1
SCNpilot_expt_1000_bf_scaffold_6985_curated_3
Rhizobium gallicum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2875..3636)
DNA (762bp) protein (254aa)
glutathione S-transferase n=1 Tax=Maricaulis sp. JL2009 RepID=UPI0003A85ACA rbh
Glutathione S-transferase protein {ECO:0000313|EMBL:AJD40610.1}; EC=2.5.1.18 {ECO:0000313|EMBL:AJD40610.1};; TaxID=1418105 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium gallicum bv. gallicum R602.;"
glutathione S-transferase domain-containing protein; K00799 glutathione S-transferase [EC:2.5.1.18]
SCNpilot_expt_1000_bf_scaffold_6985_curated_4
unknown

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comp(3928..4017)
DNA (90bp) protein (30aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6985_curated_5
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4255..4482)
DNA (228bp) protein (76aa)
glutamyl-tRNA(Gln) amidotransferase subunit beta; K02434 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit B [EC:6.3.5.6 6.3.5.7]
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A9R4_STAND
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B {ECO:0000256|HAMAP-Rule:MF_00121, ECO:0000256|SAAS:SAAS00247567}; Short=Asp/Glu-ADT subunit B {ECO:0000256|HAMAP-Rule:MF_00121};; EC=6.3.5.- {ECO:0000256|HAMAP-Rule:MF_00121};; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_expt_1000_bf_scaffold_6985_curated_6
R_Rhodospirillales_65_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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5168..5428
DNA (261bp) protein (87aa)
Tax=RIFCSPLOWO2_01_FULL_Rhodospirillales_65_14_curated
SCNpilot_expt_1000_bf_scaffold_6985_curated_7
R_Rhodospirillales_65_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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5510..5767
DNA (258bp) protein (86aa)
Tax=RIFCSPLOWO2_01_FULL_Rhodospirillales_65_14_curated
SCNpilot_expt_1000_bf_scaffold_6985_curated_8
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5733..7214)
DNA (1482bp) protein (494aa)
Glutamyl-tRNA(Gln) amidotransferase subunit A {ECO:0000256|HAMAP-Rule:MF_00120}; Short=Glu-ADT subunit A {ECO:0000256|HAMAP-Rule:MF_00120};; EC=6.3.5.7 {ECO:0000256|HAMAP-Rule:MF_00120};; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
glutamyl-tRNA(Gln) amidotransferase n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00035D7B69 rbh
glutamyl-tRNA(Gln) amidotransferase subunit A; K02433 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit A [EC:6.3.5.6 6.3.5.7] rbh
SCNpilot_expt_1000_bf_scaffold_6985_curated_9
RIFOXYB1_FULL_Caulobacterales_67_16_curated, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7214..7501)
DNA (288bp) protein (96aa)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WD50_9CAUL
Tax=RIFOXYB1_FULL_Caulobacterales_67_16_curated
gatC; glutamyl-tRNA(Gln) amidotransferase subunit C (EC:6.3.5.-); K02435 aspartyl-tRNA(Asn)/glutamyl-tRNA (Gln) amidotransferase subunit C [EC:6.3.5.6 6.3.5.7]
SCNpilot_expt_1000_bf_scaffold_6985_curated_10
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7589..8050
DNA (462bp) protein (154aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D97547
Putative Holliday junction resolvase {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086483}; EC=3.1.-.- {ECO:0000256|HAMAP-Rule:MF_00651, ECO:0000256|SAAS:SAAS00086510};; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
Holliday junction resolvase YqgF; K07447 putative holliday junction resolvase [EC:3.1.-.-]
SCNpilot_expt_1000_bf_scaffold_6985_curated_11
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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8047..9309
DNA (1263bp) protein (421aa)
major facilitator transporter
Major facilitator superfamily MFS_1 n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T5L5_CAUSK
Major facilitator superfamily MFS_1 {ECO:0000313|EMBL:ABZ69573.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_expt_1000_bf_scaffold_6985_curated_12
RBG_19FT_COMBO_Nitrospirae_55_12_curated, Nitrospirae, Bacteria

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comp(9481..9837)
DNA (357bp) protein (119aa)
Tax=RBG_19FT_COMBO_Nitrospirae_55_12_curated
SCNpilot_expt_1000_bf_scaffold_6985_curated_13
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9912..10301
DNA (390bp) protein (130aa)
aspartate carbamoyltransferase; K00609 aspartate carbamoyltransferase catalytic subunit [EC:2.1.3.2]
Aspartate carbamoyltransferase n=2 Tax=Parvibaculum RepID=PYRB_PARL1
Aspartate carbamoyltransferase {ECO:0000255|HAMAP-Rule:MF_00001}; EC=2.1.3.2 {ECO:0000255|HAMAP-Rule:MF_00001};; Aspartate transcarbamylase {ECO:0000255|HAMAP-Rule:MF_00001}; Short=ATCase {ECO:0000255|HAMAP-Rule:MF_00001};; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_6985_curated_14
RBG_16_Alphaproteobacteria_64_48_curated, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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10298..11590
DNA (1293bp) protein (431aa)
Tax=RBG_16_Alphaproteobacteria_64_48_curated
multifunctional complex type dihydroorotase; K01465 dihydroorotase [EC:3.5.2.3] rbh
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00030ECDFA rbh
SCNpilot_expt_1000_bf_scaffold_6985_curated_15
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11832..12449
DNA (618bp) protein (206aa)
Glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-PO4 G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Acyl-phosphate--glycerol-3-phosphate acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; G3P acyltransferase {ECO:0000256|HAMAP-Rule:MF_01043}; Lysophosphatidic acid synthase {ECO:0000256|HAMAP-Rule:MF_01043}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
acyl-phosphate glycerol-3-phosphate acyltransferase; K08591 glycerol-3-phosphate acyltransferase PlsY [EC:2.3.1.15]
Glycerol-3-phosphate acyltransferase n=1 Tax=Novosphingobium aromaticivorans (strain DSM 12444) RepID=PLSY_NOVAD
SCNpilot_expt_1000_bf_scaffold_6985_curated_16
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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12433..13536
DNA (1104bp) protein (368aa)
dprA; DNA processing protein DprA; K04096 DNA processing protein rbh
DNA processing protein DprA, putative n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IN34_RHOCS rbh
DNA processing protein DprA {ECO:0000313|EMBL:KGM32202.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
SCNpilot_expt_1000_bf_scaffold_6985_curated_17
unknown

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comp(13506..13766)
DNA (261bp) protein (87aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6985_curated_18
unknown

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comp(14078..14287)
DNA (210bp) protein (70aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6985_curated_19
Scytonema millei, Scytonema, Nostocales, Cyanobacteria, Bacteria

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14435..15949
DNA (1515bp) protein (505aa)
DNA topoisomerase 1 {ECO:0000256|HAMAP-Rule:MF_00952}; EC=5.99.1.2 {ECO:0000256|HAMAP-Rule:MF_00952, ECO:0000256|RuleBase:RU000518};; DNA topoisomerase I {ECO:0000256|HAMAP-Rule:MF_00952}; TaxID=1245923 species="Bacteria; Cyanobacteria; Nostocales; Scytonemataceae; Scytonema.;" source="Scytonema millei VB511283.;"
DNA topoisomerase I (EC:5.99.1.2); K03168 DNA topoisomerase I [EC:5.99.1.2] rbh
DNA topoisomerase 1 n=1 Tax=Maricaulis maris (strain MCS10) RepID=Q0AQ63_MARMM rbh
SCNpilot_expt_1000_bf_scaffold_6985_curated_20
Rhodovulum sp. NI22, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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16671..16853
DNA (183bp) protein (61aa)
Ribonuclease R {ECO:0000256|HAMAP-Rule:MF_01895}; Short=RNase R {ECO:0000256|HAMAP-Rule:MF_01895};; EC=3.1.13.1 {ECO:0000256|HAMAP-Rule:MF_01895};; TaxID=1469613 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. NI22.;"
Displaying 20 items

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