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SCNpilot_expt_1000_bf_scaffold_4158_curated

Search features with annotation key words

Displaying items 1-30 of 41 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4158_curated_1
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..1013
DNA (1011bp) protein (337aa)
hypothetical protein n=1 Tax=Dyella ginsengisoli RepID=UPI00034C311F rbh
Bradyrhizobium elkanii strain UASWS1015 Contig173, whole genome shotgun sequence {ECO:0000313|EMBL:KIU49625.1}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4158_curated_2
unknown

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1246..1482
DNA (237bp) protein (79aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4158_curated_3
unknown

Not on your lists

1492..1680
DNA (189bp) protein (63aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4158_curated_4
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1757..2506)
DNA (750bp) protein (250aa)
ABC transporter; K02049 NitT/TauT family transport system ATP-binding protein
ABC transporter related protein n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7A612_STAND
ABC transporter related protein {ECO:0000313|EMBL:ADH90127.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_expt_1000_bf_scaffold_4158_curated_5
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2503..3216)
DNA (714bp) protein (238aa)
NMT1/THI5-like domain-containing protein {ECO:0000313|EMBL:GAK45139.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
NMT1/THI5-like domain-containing protein n=1 Tax=Thiocapsa marina 5811 RepID=F9U510_9GAMM
NMT1/THI5-like domain-containing protein; K02051 NitT/TauT family transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_4158_curated_6
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3213..3476)
DNA (264bp) protein (88aa)
nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein; K02051 NitT/TauT family transport system substrate-binding protein
ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4RHS0_PHEZH
ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components {ECO:0000313|EMBL:ACG79111.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_expt_1000_bf_scaffold_4158_curated_7
Lutibaculum baratangense, Lutibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3511..5565)
DNA (2055bp) protein (685aa)
Multimodular transpeptidase-transglycosylase n=1 Tax=Lutibaculum baratangense AMV1 RepID=V4R140_9RHIZ
Multimodular transpeptidase-transglycosylase {ECO:0000313|EMBL:ESR25712.1}; EC=2.4.1.129 {ECO:0000313|EMBL:ESR25712.1};; EC=3.4.-.- {ECO:0000313|EMBL:ESR25712.1};; TaxID=631454 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Lutibaculum.;" source="Lutibaculum baratangense AMV1.;"
1A family penicillin-binding protein
SCNpilot_expt_1000_bf_scaffold_4158_curated_8
unknown

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5807..6151
DNA (345bp) protein (115aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4158_curated_9
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6126..8501
DNA (2376bp) protein (792aa)
HK97 family phage portal protein rbh
Phage portal protein, HK97 family n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRJ3_PARL1 rbh
Phage portal protein, HK97 family {ECO:0000313|EMBL:ABS62526.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_4158_curated_10

Not on your lists

8520..9095
DNA (576bp) protein (192aa)
Putative uncharacterized protein n=1 Tax=uncultured bacterium BLR3 RepID=C0IN61_9BACT
Putative uncharacterized protein {ECO:0000313|EMBL:ACN58747.1}; TaxID=506521 species="Bacteria; environmental samples.;" source="uncultured bacterium BLR3.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4158_curated_11
Caulobacter vibrioides, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9092..9346
DNA (255bp) protein (85aa)
Uncharacterized protein n=1 Tax=Caulobacter crescentus OR37 RepID=R0E5E6_CAUCE
Uncharacterized protein {ECO:0000313|EMBL:ENZ77359.1}; Flags: Precursor;; TaxID=1292034 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter crescentus OR37.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4158_curated_12
Paracoccus sp. 39524, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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9358..9912
DNA (555bp) protein (185aa)
Primosome assembly protein PriA n=1 Tax=Rhodobacter sp. CACIA14H1 RepID=V7EKB9_9RHOB
Peptidase U35 {ECO:0000313|EMBL:KGJ16051.1}; TaxID=1525718 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus sp. 39524.;"
phage prohead protease, HK97 family protein; K06904
SCNpilot_expt_1000_bf_scaffold_4158_curated_13
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9930..11171
DNA (1242bp) protein (414aa)
HK97 family phage major capsid protein rbh
Phage major capsid protein, HK97 family n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRJ6_PARL1 rbh
Phage major capsid protein, HK97 family {ECO:0000313|EMBL:ABS62529.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_4158_curated_14
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11579..12118
DNA (540bp) protein (180aa)
Gene Transfer Agent (GTA) ORFG06 {ECO:0000313|EMBL:BAQ18001.1}; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
phiE125 gp8 hypothetical protein
Putative uncharacterized protein n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JVN7_HYPDA
SCNpilot_expt_1000_bf_scaffold_4158_curated_15
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12141..12554
DNA (414bp) protein (138aa)
tail protein n=1 Tax=Oceanicaulis alexandrii RepID=UPI0003B43CCA
TP901-1 family phage major tail protein {ECO:0000313|EMBL:EKF40637.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
TP901-1 family phage major tail protein
SCNpilot_expt_1000_bf_scaffold_4158_curated_16
unknown

Not on your lists

12554..12793
DNA (240bp) protein (80aa)
hypothetical protein n=1 Tax=Methylobacterium sp. 77 RepID=UPI00037D28E3
SCNpilot_expt_1000_bf_scaffold_4158_curated_17
unknown

Not on your lists

12906..13055
DNA (150bp) protein (50aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4158_curated_18
Roseivivax halodurans, Roseivivax, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13678..14292
DNA (615bp) protein (205aa)
Glycoside hydrolase family 24 {ECO:0000313|EMBL:ETX16170.1}; TaxID=1449350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseivivax.;" source="Roseivivax halodurans JCM 10272.;"
TIGR02217 family protein n=1 Tax=Microvirga sp. WSM3557 RepID=I4YND3_9RHIZ
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4158_curated_19
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14289..15170
DNA (882bp) protein (294aa)
hypothetical protein rbh
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HRK7_PARL1 rbh
Uncharacterized protein {ECO:0000313|EMBL:ABS62540.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_4158_curated_20
Nitrobacter hamburgensis, Nitrobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15145..15582
DNA (438bp) protein (146aa)
peptidase n=1 Tax=Chelatococcus sp. GW1 RepID=UPI00036A1461
phage cell wall peptidase, NlpC/P60
Putative phage cell wall peptidase, NlpC/P60 {ECO:0000313|EMBL:ABE62247.1}; TaxID=323097 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Nitrobacter.;" source="Nitrobacter hamburgensis (strain X14 / DSM 10229).;"
SCNpilot_expt_1000_bf_scaffold_4158_curated_21
unknown

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comp(16758..16922)
DNA (165bp) protein (55aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4158_curated_22
unknown

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comp(17460..17753)
DNA (294bp) protein (98aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4158_curated_23
unknown

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comp(18204..18485)
DNA (282bp) protein (94aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4158_curated_24
unknown

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comp(18513..18926)
DNA (414bp) protein (138aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4158_curated_25
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19791..21134
DNA (1344bp) protein (448aa)
hypothetical protein
Putative uncharacterized protein n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q217Q2_RHOPB
Uncharacterized protein {ECO:0000313|EMBL:ABD87384.1}; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_expt_1000_bf_scaffold_4158_curated_26
unknown

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21136..21390
DNA (255bp) protein (85aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4158_curated_27
Klebsiella pneumoniae, Klebsiella, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21387..21593
DNA (207bp) protein (69aa)
Uncharacterized protein n=2 Tax=Klebsiella pneumoniae RepID=V3CVE6_KLEPN
Uncharacterized protein {ECO:0000313|EMBL:CDL45159.1}; TaxID=1432558 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Klebsiella.;" source="Klebsiella pneumoniae ISC21.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4158_curated_28
Stenotrophomonas maltophilia, Stenotrophomonas, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21593..22132
DNA (540bp) protein (180aa)
signal peptide
Possible signal peptide n=1 Tax=Stenotrophomonas maltophilia D457 RepID=I0KRV8_STEMA
Possible signal peptide {ECO:0000313|EMBL:CCH13799.1}; TaxID=1163399 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Stenotrophomonas; Stenotrophomonas maltophilia group.;" source="Stenotrophomonas maltophilia D457.;"
SCNpilot_expt_1000_bf_scaffold_4158_curated_29
unknown

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comp(22246..22548)
DNA (303bp) protein (101aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4158_curated_30
unknown

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22686..23183
DNA (498bp) protein (166aa)

This feature has no annotations

Displaying items 1-30 of 41 in total

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