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SCNpilot_expt_1000_bf_scaffold_3100_curated

Search features with annotation key words

Displaying items 1-30 of 38 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_3100_curated_1
Rhodomicrobium udaipurense, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..271
DNA (270bp) protein (90aa)
threonyl-tRNA synthetase; K01868 threonyl-tRNA synthetase [EC:6.1.1.3]
Threonine--tRNA ligase n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I2Z9_RHOVT
Threonine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033}; EC=6.1.1.3 {ECO:0000256|HAMAP-Rule:MF_00184, ECO:0000256|SAAS:SAAS00106033};; Threonyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00184}; TaxID=858455 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium udaipurense JA643.;"
SCNpilot_expt_1000_bf_scaffold_3100_curated_2
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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567..932
DNA (366bp) protein (122aa)
Translation initiation factor IF-3 n=1 Tax=Hyphomicrobium nitrativorans NL23 RepID=V5SC65_9RHIZ
Translation initiation factor IF-3 {ECO:0000256|HAMAP-Rule:MF_00080, ECO:0000256|RuleBase:RU000646}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
translation initiation factor IF-3; K02520 translation initiation factor IF-3
SCNpilot_expt_1000_bf_scaffold_3100_curated_3
unknown

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comp(1075..1563)
DNA (489bp) protein (163aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3100_curated_4
Caenispirillum salinarum, Caenispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1665..3398)
DNA (1734bp) protein (578aa)
Uncharacterized protein n=1 Tax=Caenispirillum salinarum AK4 RepID=K9HPX0_9PROT rbh
Uncharacterized protein {ECO:0000313|EMBL:EKV32333.1}; TaxID=1238182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirillum salinarum AK4.;"
putative glycosyl transferase, family 39 rbh
SCNpilot_expt_1000_bf_scaffold_3100_curated_5
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3487..4212
DNA (726bp) protein (242aa)
glycosyl transferase family protein
Glycosyl transferase family 2 n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T0Z3_CAUSK
Glycosyl transferase family 2 {ECO:0000313|EMBL:ABZ73641.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_expt_1000_bf_scaffold_3100_curated_6
RBG_13_Aminicenantes_62_12_curated, Aminicenantes, Bacteria

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4489..4662
DNA (174bp) protein (58aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Hirschia baltica (strain ATCC 49814 / DSM 5838 / IFAM 1418) RepID=C6XN98_HIRBI
Tax=RBG_13_Aminicenantes_62_12_curated
SCNpilot_expt_1000_bf_scaffold_3100_curated_trna_1
unknown

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4770..4856
DNA (87bp)
transferRNA
SCNpilot_expt_1000_bf_scaffold_3100_curated_7
Sphingobium chlorophenolicum, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5206..7065
DNA (1860bp) protein (620aa)
TonB-dependent receptor {ECO:0000313|EMBL:KEQ55030.1}; TaxID=46429 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chlorophenolicum.;"
TonB-dependent receptor rbh
TonB-dependent receptor n=1 Tax=Brevundimonas subvibrioides (strain ATCC 15264 / DSM 4735 / LMG 14903 / NBRC 16000 / CB 81) RepID=D9QMD7_BRESC rbh
SCNpilot_expt_1000_bf_scaffold_3100_curated_8
unknown

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comp(7593..7718)
DNA (126bp) protein (42aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3100_curated_9
unknown

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7930..8271
DNA (342bp) protein (114aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3100_curated_10
Candidatus Solibacter usitatus, Candidatus Solibacter, Solibacterales, Solibacteres, Acidobacteria, Bacteria

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comp(8926..10182)
DNA (1257bp) protein (419aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI00035FD58C rbh
mandelate racemase/muconate lactonizing protein rbh
Mandelate racemase/muconate lactonizing enzyme, C-terminal domain protein {ECO:0000313|EMBL:ABJ84412.1}; Flags: Precursor;; TaxID=234267 species="Bacteria; Acidobacteria; Solibacteres; Solibacterales; Solibacteraceae; Candidatus Solibacter.;" source="Solibacter usitatus (strain Ellin6076).;"
SCNpilot_expt_1000_bf_scaffold_3100_curated_11
Asticcacaulis sp. YBE204, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10289..10993
DNA (705bp) protein (235aa)
hypothetical protein n=1 Tax=alpha proteobacterium L41A RepID=UPI00037D7AFF
Uncharacterized protein {ECO:0000313|EMBL:ESQ79022.1}; TaxID=1282363 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis sp. YBE204.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3100_curated_12
Terriglobus roseus, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

11064..11348
DNA (285bp) protein (95aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63) RepID=I3ZB48_TERRK
Uncharacterized protein {ECO:0000313|EMBL:AFL86466.1}; Flags: Precursor;; TaxID=926566 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63).;"
SCNpilot_expt_1000_bf_scaffold_3100_curated_13
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11349..12026)
DNA (678bp) protein (226aa)
endothelin-converting enzyme 1 (EC:3.4.24.71); K07386 putative endopeptidase [EC:3.4.24.-] rbh
Peptidase family M13 n=1 Tax=Brevundimonas diminuta 470-4 RepID=L1QES3_BREDI rbh
Peptidase family M13 {ECO:0000313|EMBL:EKY26478.1}; TaxID=1035191 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta 470-4.;"
SCNpilot_expt_1000_bf_scaffold_3100_curated_14
Dyella jiangningensis, Dyella, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11981..13360)
DNA (1380bp) protein (460aa)
peptidase n=1 Tax=Maricaulis sp. JL2009 RepID=UPI0003AA60C9
Peptidase M13 {ECO:0000313|EMBL:AHX13865.1}; TaxID=1379159 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Dyella.;" source="Dyella jiangningensis.;"
endothelin-converting protein 1 (EC:3.4.24.71); K01415 endothelin-converting enzyme [EC:3.4.24.71]
SCNpilot_expt_1000_bf_scaffold_3100_curated_15
Bradyrhizobium oligotrophicum, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13391..14161)
DNA (771bp) protein (257aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Bradyrhizobium oligotrophicum S58 RepID=M4ZE59_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:BAM92112.1}; TaxID=1245469 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium oligotrophicum S58.;"
SCNpilot_expt_1000_bf_scaffold_3100_curated_16
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14178..14783)
DNA (606bp) protein (202aa)
methyltransferase
Methyltransferase n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VJ50_CAUST
Methyltransferase {ECO:0000313|EMBL:ADG10138.1}; Flags: Precursor;; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
SCNpilot_expt_1000_bf_scaffold_3100_curated_17
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15662..16639
DNA (978bp) protein (326aa)
thioredoxin reductase n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B645B2 rbh
Thioredoxin reductase {ECO:0000256|RuleBase:RU003881}; EC=1.8.1.9 {ECO:0000256|RuleBase:RU003881};; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
thioredoxin reductase; K00384 thioredoxin reductase (NADPH) [EC:1.8.1.9] rbh
SCNpilot_expt_1000_bf_scaffold_3100_curated_18
Thalassospira sp. HJ, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16844..17554
DNA (711bp) protein (237aa)
LysR family transcriptional regulator {ECO:0000313|EMBL:KJE35825.1}; TaxID=1616823 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira sp. HJ.;"
LysR family transcriptional regulator n=1 Tax=Thalassospira profundimaris WP0211 RepID=K2LWM7_9PROT
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_3100_curated_19
Chromobacterium piscinae, Chromobacterium, Neisseriales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17871..18374
DNA (504bp) protein (168aa)
Uncharacterized protein {ECO:0000313|EMBL:KIA79848.1}; TaxID=686831 species="Bacteria; Proteobacteria; Betaproteobacteria; Neisseriales; Chromobacteriaceae; Chromobacterium.;" source="Chromobacterium piscinae.;"
hypothetical protein n=1 Tax=beta proteobacterium L13 RepID=UPI00035E0BDE
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3100_curated_20
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18421..19635)
DNA (1215bp) protein (405aa)
Aspartate aminotransferase {ECO:0000313|EMBL:CDO58744.1}; EC=2.6.1.1 {ECO:0000313|EMBL:CDO58744.1};; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
aspartate aminotransferase; K00812 aspartate aminotransferase [EC:2.6.1.1] rbh
Aminotransferase class I and II n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HVI1_PARL1 rbh
SCNpilot_expt_1000_bf_scaffold_3100_curated_21
unknown

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19846..20283
DNA (438bp) protein (146aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3100_curated_22

Not on your lists

20405..20977
DNA (573bp) protein (191aa)
Uncharacterized protein {ECO:0000313|EMBL:KKU76488.1}; TaxID=1618845 species="Bacteria; Parcubacteria.;" source="Parcubacteria bacterium GW2011_GWA2_47_64.;"
membrane protein n=1 Tax=Methylocystis rosea RepID=UPI00037C777E
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3100_curated_23
unknown

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21048..21410
DNA (363bp) protein (121aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3100_curated_24
unknown

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comp(21536..21826)
DNA (291bp) protein (97aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3100_curated_25
Terriglobus saanensis, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

21997..23403
DNA (1407bp) protein (469aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00037622C6
pyrrolo-quinoline quinone repeat-containing protein
Pyrrolo-quinoline quinone repeat-containing protein {ECO:0000313|EMBL:ADV82024.1}; TaxID=401053 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus saanensis (strain ATCC BAA-1853 / DSM 23119 / SP1PR4).;"
SCNpilot_expt_1000_bf_scaffold_3100_curated_26
unknown

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comp(23667..23849)
DNA (183bp) protein (61aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_3100_curated_27
Terriglobus roseus, Terriglobus, Acidobacteriales, Acidobacteriia, Acidobacteria, Bacteria

Not on your lists

24481..25227
DNA (747bp) protein (249aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI000361D7CF
Pyrrolo-quinoline quinone coenzyme N-terminus
Pyrrolo-quinoline quinone coenzyme N-terminus {ECO:0000313|EMBL:AFL89622.1}; Flags: Precursor;; TaxID=926566 species="Bacteria; Acidobacteria; Acidobacteriales; Acidobacteriaceae; Terriglobus.;" source="Terriglobus roseus (strain DSM 18391 / NRRL B-41598 / KBS 63).;"
SCNpilot_expt_1000_bf_scaffold_3100_curated_28
Brevundimonas diminuta, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25306..25653)
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Brevundimonas diminuta ATCC 11568 RepID=F4QZX8_BREDI
Uncharacterized protein {ECO:0000313|EMBL:EGF94057.1}; TaxID=751586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas diminuta ATCC 11568.;"
hypothetical protein; K09922 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_3100_curated_29
Oligotropha carboxidovorans, Oligotropha, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

26206..27651
DNA (1446bp) protein (482aa)
RND efflux system, outer membrane lipoprotein, NodT rbh
Efflux transporter, outer membrane factor lipoprotein, NodT family n=2 Tax=Oligotropha carboxidovorans RepID=B6JI36_OLICO rbh
Efflux transporter, outer membrane factor lipoprotein, NodT family {ECO:0000313|EMBL:AEI06675.1}; TaxID=504832 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Oligotropha.;" source="Oligotropha carboxidovorans (strain ATCC 49405 / DSM 1227 / OM5).;"
Displaying items 1-30 of 38 in total

View Taxonomy