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SCNpilot_expt_1000_bf_scaffold_5400_curated

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5400_curated_1
Caenispirillum salinarum, Caenispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1..465)
DNA (465bp) protein (155aa)
PTS system nitrogen-specific IIA component, PtsN n=1 Tax=Caenispirillum salinarum AK4 RepID=K9H4H9_9PROT
PTS system nitrogen-specific IIA component, PtsN {ECO:0000313|EMBL:EKV31994.1}; TaxID=1238182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirillum salinarum AK4.;"
ptsN; phosphotransferase system mannitol/fructose-specific IIA domain-containing protein
SCNpilot_expt_1000_bf_scaffold_5400_curated_2
unknown

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670..1152
DNA (483bp) protein (161aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5400_curated_3
unknown

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1798..2148
DNA (351bp) protein (117aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5400_curated_4
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2169..2966)
DNA (798bp) protein (266aa)
ABC transporter ATP-binding protein {ECO:0000313|EMBL:CDO59948.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
ABC transporter, ATP-binding protein n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RKX5_9PROT rbh
ABC transporter ATP-binding protein; K06861 lipopolysaccharide export system ATP-binding protein [EC:3.6.3.-] rbh
SCNpilot_expt_1000_bf_scaffold_5400_curated_5
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3020..3574)
DNA (555bp) protein (185aa)
cell envelope biogenesis YhbN; K09774 lipopolysaccharide export system protein LptA
Cell envelope biogenesis YhbN n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HPI4_PARL1
Cell envelope biogenesis YhbN {ECO:0000313|EMBL:ABS61817.1}; Flags: Precursor;; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_5400_curated_6
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3571..4239)
DNA (669bp) protein (223aa)
hypothetical protein; K11719 lipopolysaccharide export system protein LptC
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HPI5_PARL1
Uncharacterized protein {ECO:0000313|EMBL:ABS61818.1}; Flags: Precursor;; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_5400_curated_7
Dinoroseobacter shibae, Dinoroseobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4236..5300)
DNA (1065bp) protein (355aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00035D205D rbh
yrbH; arabinose-5-phosphate isomerase; K06041 arabinose-5-phosphate isomerase [EC:5.3.1.13] rbh
Arabinose-5-phosphate isomerase {ECO:0000313|EMBL:ABV95321.1}; EC=5.3.1.13 {ECO:0000313|EMBL:ABV95321.1};; TaxID=398580 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Dinoroseobacter.;" source="Dinoroseobacter shibae (strain DSM 16493 / NCIMB 14021 / DFL 12).;"
SCNpilot_expt_1000_bf_scaffold_5400_curated_8
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5598..6209)
DNA (612bp) protein (204aa)
Ribonuclease D related protein {ECO:0000313|EMBL:CDO59944.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
Ribonuclease D n=1 Tax=Oceanibaculum indicum P24 RepID=K2K1Y7_9PROT rbh
rnd; ribonuclease D; K03684 ribonuclease D [EC:3.1.13.5] rbh
SCNpilot_expt_1000_bf_scaffold_5400_curated_9
unknown

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6255..6401
DNA (147bp) protein (49aa)

This feature has no annotations

Displaying 9 items

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