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SCNpilot_expt_1000_bf_scaffold_1897_curated

Search features with annotation key words

Displaying items 1-30 of 32 in total
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_1897_curated_1
Devosia sp. DDB001, Devosia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..1601)
DNA (1599bp) protein (533aa)
Polyribonucleotide nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_01595}; EC=2.7.7.8 {ECO:0000256|HAMAP-Rule:MF_01595};; Polynucleotide phosphorylase {ECO:0000256|HAMAP-Rule:MF_01595}; TaxID=1228055 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Devosia.;" source="Devosia sp. DDB001.;"
Polyribonucleotide nucleotidyltransferase n=2 Tax=Ochrobactrum intermedium RepID=C4WEL7_9RHIZ rbh
polyribonucleotide nucleotidyltransferase; K00962 polyribonucleotide nucleotidyltransferase [EC:2.7.7.8] rbh
SCNpilot_expt_1000_bf_scaffold_1897_curated_2
Maricaulis maris, Maricaulis, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(1825..2091)
DNA (267bp) protein (89aa)
30S ribosomal protein S15; K02956 small subunit ribosomal protein S15
30S ribosomal protein S15 n=1 Tax=Maricaulis maris (strain MCS10) RepID=RS15_MARMM
30S ribosomal protein S15 {ECO:0000255|HAMAP-Rule:MF_01343}; TaxID=394221 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Maricaulis.;" source="Maricaulis maris (strain MCS10).;"
SCNpilot_expt_1000_bf_scaffold_1897_curated_3
unknown

Not on your lists

3328..3915
DNA (588bp) protein (196aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1897_curated_4
Bradyrhizobium elkanii, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3922..4389)
DNA (468bp) protein (156aa)
Ribosome-binding factor A {ECO:0000256|HAMAP-Rule:MF_00003, ECO:0000256|SAAS:SAAS00023386}; TaxID=29448 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium elkanii.;"
Ribosome-binding factor A n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1IL50_9BRAD
rbfA; ribosome-binding factor A; K02834 ribosome-binding factor A
SCNpilot_expt_1000_bf_scaffold_1897_curated_5
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4542..6824)
DNA (2283bp) protein (761aa)
translation initiation factor IF-2; K02519 translation initiation factor IF-2 rbh
Translation initiation factor IF-2 n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=IF2_PARL1 rbh
Translation initiation factor IF-2 {ECO:0000255|HAMAP-Rule:MF_00100}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_1897_curated_6
Caulobacter segnis, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7054..7512)
DNA (459bp) protein (153aa)
hypothetical protein; K07742 hypothetical protein
Putative uncharacterized protein n=1 Tax=Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC 15250 / LMG 17158 / TK0059) RepID=D5VDL1_CAUST
Uncharacterized protein {ECO:0000313|EMBL:ADG08561.1}; TaxID=509190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter segnis (strain ATCC 21756 / DSM 7131 / JCM 7823 / NBRC; 15250 / LMG 17158 / TK0059) (Mycoplana segnis).;"
SCNpilot_expt_1000_bf_scaffold_1897_curated_7
unknown

Not on your lists

7726..8013
DNA (288bp) protein (96aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1897_curated_8
Hyphomicrobium nitrativorans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8003..9427)
DNA (1425bp) protein (475aa)
transcription elongation factor NusA n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002D8A33C rbh
Transcription termination/antitermination protein NusA {ECO:0000256|HAMAP-Rule:MF_00945}; TaxID=1029756 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium nitrativorans NL23.;"
nusA; transcription elongation protein; K02600 N utilization substance protein A rbh
SCNpilot_expt_1000_bf_scaffold_1897_curated_9

Not on your lists

comp(9430..10020)
DNA (591bp) protein (197aa)
Ribosome maturation factor RimP (Fragment) n=1 Tax=uncultured bacterium RepID=K2AH47_9BACT
Ribosome maturation factor RimP {ECO:0000256|SAAS:SAAS00001667}; Flags: Fragment;; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
hypothetical protein; K09748 ribosome maturation factor RimP
SCNpilot_expt_1000_bf_scaffold_1897_curated_10
unknown

Not on your lists

comp(10400..10672)
DNA (273bp) protein (91aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_1897_curated_11
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10669..11412)
DNA (744bp) protein (248aa)
tRNA (guanine-N(7)-)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; EC=2.1.1.33 {ECO:0000256|HAMAP-Rule:MF_01057};; tRNA (guanine(46)-N(7))-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; tRNA(m7G46)-methyltransferase {ECO:0000256|HAMAP-Rule:MF_01057}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
tRNA (guanine-N7-)-methyltransferase (EC:2.1.1.33); K03439 tRNA (guanine-N7-)-methyltransferase [EC:2.1.1.33]
tRNA (guanine-N(7)-)-methyltransferase n=1 Tax=Azospirillum sp. (strain B510) RepID=D3NYL3_AZOS1
SCNpilot_expt_1000_bf_scaffold_1897_curated_12
R_Phenylobacterium_70_10, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11445..11699
DNA (255bp) protein (85aa)
prevent-host-death protein n=1 Tax=Caulobacter sp. JGI 0001013-O16 RepID=UPI00035DF825
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1897_curated_13
Azorhizobium caulinodans, Azorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11696..11965
DNA (270bp) protein (90aa)
addiction module toxin
Addiction module toxin n=1 Tax=Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / ORS 571) RepID=A8IME9_AZOC5
Addiction module toxin {ECO:0000313|EMBL:BAF86537.1}; TaxID=438753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Azorhizobium.;" source="Azorhizobium caulinodans (strain ATCC 43989 / DSM 5975 / JCM 20966 /; NBRC 14845 / NCIMB 13405 / ORS 571).;"
SCNpilot_expt_1000_bf_scaffold_1897_curated_14
Rhodovulum sp. PH10, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12118..13308)
DNA (1191bp) protein (397aa)
S-adenosylmethionine synthase n=1 Tax=Rhodovulum sp. PH10 RepID=J6UCY7_9RHOB rbh
S-adenosylmethionine synthase {ECO:0000256|RuleBase:RU000541}; EC=2.5.1.6 {ECO:0000256|RuleBase:RU000541};; TaxID=1187851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sp. PH10.;"
S-adenosylmethionine synthetase (EC:2.5.1.6); K00789 S-adenosylmethionine synthetase [EC:2.5.1.6] rbh
SCNpilot_expt_1000_bf_scaffold_1897_curated_15
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13502..14143
DNA (642bp) protein (214aa)
imidazoleglycerol-phosphate dehydratase; K01693 imidazoleglycerol-phosphate dehydratase [EC:4.2.1.19] rbh
Imidazoleglycerol-phosphate dehydratase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=HIS7_PARL1 rbh
Imidazoleglycerol-phosphate dehydratase {ECO:0000255|HAMAP-Rule:MF_00076}; Short=IGPD {ECO:0000255|HAMAP-Rule:MF_00076};; EC=4.2.1.19 {ECO:0000255|HAMAP-Rule:MF_00076};; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_1897_curated_16
Mesorhizobium sp. ORS3324, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14268..14603
DNA (336bp) protein (112aa)
hypothetical protein n=1 Tax=Sandarakinorhabdus sp. AAP62 RepID=UPI0002E01748
Excinuclease ABC C subunit domain protein {ECO:0000313|EMBL:CDX21316.1}; TaxID=1505932 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. ORS3324.;"
excinuclease ABC subunit C; K07461 putative endonuclease
SCNpilot_expt_1000_bf_scaffold_1897_curated_17
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14673..15194
DNA (522bp) protein (174aa)
Transcription elongation factor {ECO:0000313|EMBL:CDO58236.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
hypothetical protein n=1 Tax=Maricaulis sp. JL2009 RepID=UPI0003B75A67
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1897_curated_18
Phenylobacterium zucineum, Phenylobacterium, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15184..15573
DNA (390bp) protein (130aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Phenylobacterium zucineum (strain HLK1) RepID=B4REJ4_PHEZH
Uncharacterized protein {ECO:0000313|EMBL:ACG76936.1}; TaxID=450851 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Phenylobacterium.;" source="Phenylobacterium zucineum (strain HLK1).;"
SCNpilot_expt_1000_bf_scaffold_1897_curated_19
Oceanicaulis sp. HTCC2633, Oceanicaulis, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15698..16228)
DNA (531bp) protein (177aa)
chemotaxis protein CheY n=1 Tax=Oceanicaulis alexandrii RepID=UPI0003B60DC4
Response regulator {ECO:0000313|EMBL:EAP89483.1}; TaxID=314254 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Oceanicaulis.;" source="Oceanicaulis sp. HTCC2633.;"
response regulator receiver protein; K15012 two-component system, response regulator RegA
SCNpilot_expt_1000_bf_scaffold_1897_curated_20
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16294..17664)
DNA (1371bp) protein (457aa)
Integral membrane sensor signal transduction histidine kinase {ECO:0000313|EMBL:GAK43862.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
integral membrane sensor signal transduction histidine kinase; K15011 two-component system, sensor histidine kinase RegB [EC:2.7.13.3] rbh
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HP07_PARL1 rbh
SCNpilot_expt_1000_bf_scaffold_1897_curated_21
Methyloceanibacter caenitepidi, Methyloceanibacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17695..18303
DNA (609bp) protein (203aa)
Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone {ECO:0000313|EMBL:BAQ16136.1}; TaxID=1384459 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methyloceanibacter.;" source="Methyloceanibacter caenitepidi.;"
Classical-complement-pathway C3/C5 convertase; K07152
Classical-complement-pathway C3/C5 convertase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HP04_PARL1
SCNpilot_expt_1000_bf_scaffold_1897_curated_22
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18409..19293)
DNA (885bp) protein (295aa)
5,10-methylene-tetrahydrofolate dehydrogenase n=1 Tax=Fodinicurvata sediminis RepID=UPI0003B6FFD8 rbh
methylenetetrahydrofolate dehydrogenase (EC:1.5.1.5); K01491 methylenetetrahydrofolate dehydrogenase (NADP+) / methenyltetrahydrofolate cyclohydrolase [EC:1.5.1.5 3.5.4.9] rbh
Bifunctional protein FolD {ECO:0000256|HAMAP-Rule:MF_01576}; TaxID=652103 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain DX-1).;"
SCNpilot_expt_1000_bf_scaffold_1897_curated_23
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19296..19589)
DNA (294bp) protein (98aa)
hypothetical protein n=1 Tax=Chelatococcus sp. GW1 RepID=UPI0002F1A59F
Membrane protein {ECO:0000313|EMBL:KGM30693.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
hypothetical protein; K02221 YggT family protein
SCNpilot_expt_1000_bf_scaffold_1897_curated_trna_1
unknown

Not on your lists

19758..19830
DNA (73bp)
transferRNA
SCNpilot_expt_1000_bf_scaffold_1897_curated_24
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

19982..20434
DNA (453bp) protein (151aa)
hypothetical protein n=1 Tax=Woodsholea maritima RepID=UPI00036C44DF
Uncharacterized protein {ECO:0000313|EMBL:GAM97093.1}; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_1897_curated_25
Methylobacterium mesophilicum, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

21276..23012
DNA (1737bp) protein (579aa)
Sdenylate cyclase n=1 Tax=Methylobacterium mesophilicum SR1.6/6 RepID=M7Z8W4_9RHIZ
Sdenylate cyclase {ECO:0000313|EMBL:EMS44624.1}; TaxID=908290 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium mesophilicum SR1.6/6.;"
putative Chase2 sensor protein; K01768 adenylate cyclase [EC:4.6.1.1]
SCNpilot_expt_1000_bf_scaffold_1897_curated_26
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(23113..23910)
DNA (798bp) protein (266aa)
D-alanyl-D-alanine dipeptidase {ECO:0000256|HAMAP-Rule:MF_01924, ECO:0000256|PIRNR:PIRNR026671}; Short=D-Ala-D-Ala dipeptidase {ECO:0000256|HAMAP-Rule:MF_01924, ECO:0000256|PIRNR:PIRNR026671};; EC=3.4.13.22 {ECO:0000256|HAMAP-Rule:MF_01924, ECO:0000256|PIRNR:PIRNR026671};; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
ddpX; putative D-alanyl-d-alanine dipeptidase; K08641 D-alanyl-D-alanine dipeptidase [EC:3.4.13.22]
Putative D-alanyl-d-alanine dipeptidase n=1 Tax=Dinoroseobacter shibae (strain DFL 12) RepID=A8LLX3_DINSH
SCNpilot_expt_1000_bf_scaffold_1897_curated_27
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

23959..25032
DNA (1074bp) protein (358aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HTE6_PARL1
Uncharacterized protein {ECO:0000313|EMBL:ABS63179.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_1897_curated_trna_2
unknown

Not on your lists

25081..25154
DNA (74bp)
transferRNA
SCNpilot_expt_1000_bf_scaffold_1897_curated_28
Rhodanobacter thiooxydans, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(25183..25641)
DNA (459bp) protein (153aa)
hypothetical protein n=1 Tax=Acidobacteriaceae bacterium KBS 96 RepID=UPI00037F6CB1
Uncharacterized protein {ECO:0000313|EMBL:EIL97732.1}; TaxID=1163409 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter thiooxydans LCS2.;"
hypothetical protein
Displaying items 1-30 of 32 in total

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