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SCNpilot_expt_1000_bf_scaffold_4779_curated

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4779_curated_1
alpha proteobacterium BAL199, Alphaproteobacteria, Proteobacteria, Bacteria

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1..528
DNA (528bp) protein (176aa)
Exonuclease III n=1 Tax=alpha proteobacterium BAL199 RepID=A8TXM4_9PROT
Exonuclease III {ECO:0000313|EMBL:EDP62813.1}; TaxID=331869 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium BAL199.;"
xthA; exodeoxyribonuclease III (EC:3.1.11.2); K01142 exodeoxyribonuclease III [EC:3.1.11.2]
SCNpilot_expt_1000_bf_scaffold_4779_curated_2
Azospirillum thiophilum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

613..1203
DNA (591bp) protein (197aa)
Phosphoglycerate mutase {ECO:0000313|EMBL:KJR66237.1}; TaxID=528244 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum thiophilum.;"
putative phosphoglycerate mutase; K15634 probable phosphoglycerate mutase [EC:5.4.2.1]
Putative phosphoglycerate mutase n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z7M3_AZOL4
SCNpilot_expt_1000_bf_scaffold_4779_curated_3
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1246..2205)
DNA (960bp) protein (320aa)
Uncharacterized protein {ECO:0000313|EMBL:KGM35393.1}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
Adenylate cyclase n=1 Tax=Caenispirillum salinarum AK4 RepID=K9GZ42_9PROT
CHAD domain-containing protein
SCNpilot_expt_1000_bf_scaffold_4779_curated_4
Sphingomonas sp. SRS2, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2277..2576)
DNA (300bp) protein (100aa)
Imidazole glycerol phosphate synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; EC=4.1.3.- {ECO:0000256|HAMAP-Rule:MF_01013};; IGP synthase cyclase subunit {ECO:0000256|HAMAP-Rule:MF_01013}; IGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; ImGP synthase subunit HisF {ECO:0000256|HAMAP-Rule:MF_01013}; TaxID=133190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. SRS2.;"
Imidazole glycerol phosphate synthase subunit HisF n=1 Tax=Oceanibaculum indicum P24 RepID=K2JSG2_9PROT
Imidazole glycerol phosphate synthase cyclase subunit; K02500 cyclase [EC:4.1.3.-]
SCNpilot_expt_1000_bf_scaffold_4779_curated_5
RBG_13_Deltaproteobacteria_61_14_curated, Deltaproteobacteria, Proteobacteria, Bacteria

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2843..2983
DNA (141bp) protein (47aa)
Tax=RBG_13_Deltaproteobacteria_61_14_curated
SCNpilot_expt_1000_bf_scaffold_4779_curated_6
unknown

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3683..4018
DNA (336bp) protein (112aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4779_curated_7
RLO_Rhodospirillales_58_28, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4086..4559)
DNA (474bp) protein (158aa)
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_58_28_curated
hypothetical protein; K03643 LPS-assembly lipoprotein
Uncharacterized protein n=1 Tax=Rhodospirillum centenum (strain ATCC 51521 / SW) RepID=B6IU55_RHOCS
SCNpilot_expt_1000_bf_scaffold_4779_curated_8
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4670..6988)
DNA (2319bp) protein (773aa)
leucyl-tRNA synthetase; K01869 leucyl-tRNA synthetase [EC:6.1.1.4] rbh
Leucine--tRNA ligase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D6ZYV0_STAND rbh
Leucine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00049}; EC=6.1.1.4 {ECO:0000256|HAMAP-Rule:MF_00049};; Leucyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00049}; Flags: Precursor;; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_expt_1000_bf_scaffold_4779_curated_9
alpha proteobacterium U9-1i, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7203..7664)
DNA (462bp) protein (154aa)
Uncharacterized protein {ECO:0000313|EMBL:GAM97295.1}; TaxID=1605283 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium U9-1i.;"
hypothetical protein
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HSL8_PARL1
SCNpilot_expt_1000_bf_scaffold_4779_curated_10
RLO_Rhodospirillales_67_15, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(7827..8414)
DNA (588bp) protein (196aa)
Tax=RIFCSPLOWO2_12_FULL_Rhodospirillales_67_15_curated
Thiamin-phosphate pyrophosphorylase n=1 Tax=Caenispirillum salinarum AK4 RepID=K9H542_9PROT
thiamine monophosphate synthase
SCNpilot_expt_1000_bf_scaffold_4779_curated_11
Sphingobium sp. ba1, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8431..8988)
DNA (558bp) protein (186aa)
TonB-dependent receptor-like protein {ECO:0000313|EMBL:KFL46213.1}; TaxID=1522072 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium sp. ba1.;"
SCNpilot_expt_1000_bf_scaffold_4779_curated_12
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9121..9624)
DNA (504bp) protein (168aa)
Uncharacterized protein {ECO:0000313|EMBL:AHK47629.1}; TaxID=1416753 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens OV14.;"
hypothetical protein
Uncharacterized protein n=1 Tax=Tistrella mobilis (strain KA081020-065) RepID=I3TR80_TISMK
SCNpilot_expt_1000_bf_scaffold_4779_curated_13
Azospirillum lipoferum, Azospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9640..10185)
DNA (546bp) protein (182aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Azospirillum lipoferum (strain 4B) RepID=G7Z7M8_AZOL4
Uncharacterized protein {ECO:0000313|EMBL:CBS85482.1}; TaxID=862719 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Azospirillum.;" source="Azospirillum lipoferum (strain 4B).;"
SCNpilot_expt_1000_bf_scaffold_4779_curated_14
Rubellimicrobium thermophilum, Rubellimicrobium, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10361..10999
DNA (639bp) protein (213aa)
Two component transcriptional regulator, winged helix family n=1 Tax=Rubellimicrobium thermophilum DSM 16684 RepID=S9SM90_9RHOB
Two component transcriptional regulator, winged helix family {ECO:0000313|EMBL:EPX87524.1}; TaxID=1123069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rubellimicrobium.;" source="Rubellimicrobium thermophilum DSM 16684.;"
DNA-binding response regulator
SCNpilot_expt_1000_bf_scaffold_4779_curated_15
Polymorphum gilvum, Polymorphum, Alphaproteobacteria, Proteobacteria, Bacteria

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11279..13165
DNA (1887bp) protein (629aa)
pbpC; penicillin-binding transpeptidase/transglycosylase rbh
Putative penicillin-binding transpeptidase/transglycosylase protein n=1 Tax=Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1) RepID=F2IYF5_POLGS rbh
Putative penicillin-binding transpeptidase/transglycosylase protein {ECO:0000313|EMBL:ADZ68468.1}; TaxID=991905 species="Bacteria; Proteobacteria; Alphaproteobacteria; Polymorphum.;" source="Polymorphum gilvum (strain LMG 25793 / CGMCC 1.9160 / SL003B-26A1).;"
SCNpilot_expt_1000_bf_scaffold_4779_curated_16
bacterium YEK0313, Bacteria

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comp(13530..14243)
DNA (714bp) protein (238aa)
Uncharacterized protein {ECO:0000313|EMBL:CEJ16167.1}; TaxID=1522316 species="Bacteria.;" source="bacterium YEK0313.;"
metal-dependent hydrolase n=1 Tax=Xanthobacteraceae RepID=UPI00036B5DF4
hypothetical protein; K07043
SCNpilot_expt_1000_bf_scaffold_4779_curated_17
Rhodobacter sp. AKP1, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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14254..14901
DNA (648bp) protein (216aa)
Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation n=1 Tax=Rhodobacter sp. AKP1 RepID=L1K6V9_9RHOB
Periplasmic thiol:disulfide oxidoreductase DsbB, required for DsbA reoxidation {ECO:0000313|EMBL:EKX56561.1}; TaxID=1247725 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. AKP1.;"
disulfide bond formation protein DsbB
SCNpilot_expt_1000_bf_scaffold_4779_curated_18
Sphingomonas changbaiensis, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14898..15380
DNA (483bp) protein (161aa)
ubiquinone biosynthesis protein COQ7; K06134 ubiquinone biosynthesis monooxygenase Coq7 [EC:1.14.13.-]
2-nonaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase {ECO:0000256|HAMAP-Rule:MF_01658}; EC=1.14.13.- {ECO:0000256|HAMAP-Rule:MF_01658};; 5-demethoxyubiquinone hydroxylase {ECO:0000256|HAMAP-Rule:MF_01658}; TaxID=1219043 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas changbaiensis NBRC 104936.;"
Ubiquinone biosynthesis protein COQ7 n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HTM0_PARL1
Displaying 18 items

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