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SCNpilot_expt_1000_bf_scaffold_7372_curated

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Displaying 20 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_7372_curated_1
Xanthobacter autotrophicus, Xanthobacter, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1..660
DNA (660bp) protein (220aa)
carbamoyl-phosphate synthase large subunit; K01955 carbamoyl-phosphate synthase large subunit [EC:6.3.5.5]
Carbamoyl-phosphate synthase large chain n=1 Tax=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) RepID=A7IIZ7_XANP2
Carbamoyl-phosphate synthase large chain {ECO:0000256|HAMAP-Rule:MF_01210}; EC=6.3.5.5 {ECO:0000256|HAMAP-Rule:MF_01210};; Carbamoyl-phosphate synthetase ammonia chain {ECO:0000256|HAMAP-Rule:MF_01210}; TaxID=78245 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Xanthobacter.;" source="Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2).;"
SCNpilot_expt_1000_bf_scaffold_7372_curated_2
Inquilinus limosus, Inquilinus, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

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787..1260
DNA (474bp) protein (158aa)
transcription elongation factor GreA n=1 Tax=Novispirillum itersonii RepID=UPI0003655E4F
Transcription elongation factor GreA {ECO:0000256|HAMAP-Rule:MF_00105, ECO:0000256|SAAS:SAAS00018706}; Transcript cleavage factor GreA {ECO:0000256|HAMAP-Rule:MF_00105}; TaxID=1398085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Inquilinus.;" source="Inquilinus limosus MP06.;"
greA; transcription elongation factor GreA; K03624 transcription elongation factor GreA
SCNpilot_expt_1000_bf_scaffold_7372_curated_3
Sorangium cellulosum, Sorangium, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

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comp(1461..2450)
DNA (990bp) protein (330aa)
hypothetical protein
Uncharacterized protein n=1 Tax=Sorangium cellulosum (strain So ce56) RepID=A9F6D8_SORC5
Uncharacterized protein {ECO:0000313|EMBL:CAN91425.1}; TaxID=448385 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Sorangiineae; Polyangiaceae; Sorangium.;" source="Sorangium cellulosum (strain So ce56) (Polyangium cellulosum (strain; So ce56)).;"
SCNpilot_expt_1000_bf_scaffold_7372_curated_4
Rhizobium leguminosarum, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2505..3146)
DNA (642bp) protein (214aa)
Uncharacterized protein {ECO:0000313|EMBL:KEC74764.1}; TaxID=1408223 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium leguminosarum bv. phaseoli CCGM1.;"
Putative uncharacterized protein n=1 Tax=Rhizobium etli CNPAF512 RepID=F2A5F9_RHIET
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_7372_curated_5
unknown

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comp(3542..3676)
DNA (135bp) protein (45aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7372_curated_6
R_Brevundimonas_70_19, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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3898..4188
DNA (291bp) protein (97aa)
Tax=RIFCSPHIGHO2_01_FULL_Brevundimonas_70_19_curated
DNA-binding response regulator ChvI n=1 Tax=Brevundimonas abyssalis TAR-001 RepID=U2YSD7_9CAUL
transcriptional regulator; K14981 two-component system, OmpR family, response regulator ChvI
SCNpilot_expt_1000_bf_scaffold_7372_curated_7
unknown

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comp(4176..4346)
DNA (171bp) protein (57aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7372_curated_8
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

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4651..5769
DNA (1119bp) protein (373aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
integral membrane sensor signal transduction histidine kinase; K14980 two-component system, OmpR family, sensor histidine kinase ChvG [EC:2.7.13.3] rbh
Integral membrane sensor signal transduction histidine kinase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HPA2_PARL1 rbh
SCNpilot_expt_1000_bf_scaffold_7372_curated_9
Roseovarius nubinhibens, Roseovarius, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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5762..5977
DNA (216bp) protein (72aa)
aldolase n=1 Tax=Sphingomonas phyllosphaerae RepID=UPI0003B3F55B
Putative kinase/phosphatase {ECO:0000313|EMBL:EAP75894.1}; TaxID=89187 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Roseovarius.;" source="Roseovarius nubinhibens ISM.;"
HPr kinase/phosphorylase
SCNpilot_expt_1000_bf_scaffold_7372_curated_10
unknown

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6001..6246
DNA (246bp) protein (82aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7372_curated_11
alpha proteobacterium Q-1, Alphaproteobacteria, Proteobacteria, Bacteria

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6273..6695
DNA (423bp) protein (141aa)
PTS system mannose-specific EIIAB component {ECO:0000313|EMBL:GAK32484.1}; TaxID=1492281 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium Q-1.;"
PTS system fructose subfamily transporter subunit IIA; K02793 PTS system, mannose-specific IIA component [EC:2.7.1.69]
PTS system fructose subfamily IIA component n=1 Tax=Rhodospirillum photometricum DSM 122 RepID=H6SNN7_RHOPH
SCNpilot_expt_1000_bf_scaffold_7372_curated_12
Rhizobium sp., Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6695..6967
DNA (273bp) protein (91aa)
Phosphocarrier protein HPr n=1 Tax=Rhizobium sp. RepID=L0NMN2_RHISP
Phosphocarrier protein HPr {ECO:0000313|EMBL:CCF21582.1}; EC=2.7.11.- {ECO:0000313|EMBL:CCF21582.1};; TaxID=391 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp.;"
PTS system phosphocarrier protein HPr nitrogen regulation; K11189 phosphocarrier protein
SCNpilot_expt_1000_bf_scaffold_7372_curated_13
Maricaulis maris, Maricaulis, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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6967..7860
DNA (894bp) protein (298aa)
GumN family protein n=1 Tax=Maricaulis sp. JL2009 RepID=UPI0003AA818B
GumN family protein; K09973 hypothetical protein
GumN family protein {ECO:0000313|EMBL:ABI67356.1}; Flags: Precursor;; TaxID=394221 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Hyphomonadaceae; Maricaulis.;" source="Maricaulis maris (strain MCS10).;"
SCNpilot_expt_1000_bf_scaffold_7372_curated_14
Microvirga lotononidis, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7975..9381
DNA (1407bp) protein (469aa)
Adenosylhomocysteinase n=1 Tax=Microvirga sp. WSM3557 RepID=I4YYK9_9RHIZ rbh
Adenosylhomocysteinase {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548}; EC=3.3.1.1 {ECO:0000256|HAMAP-Rule:MF_00563, ECO:0000256|RuleBase:RU000548};; S-adenosyl-L-homocysteine hydrolase {ECO:0000256|HAMAP-Rule:MF_00563}; TaxID=864069 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga lotononidis.;"
S-adenosylhomocysteine hydrolase; K01251 adenosylhomocysteinase [EC:3.3.1.1] rbh
SCNpilot_expt_1000_bf_scaffold_7372_curated_15
unknown

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9422..9799
DNA (378bp) protein (126aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7372_curated_16
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

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10822..11505
DNA (684bp) protein (228aa)
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
PAS/PAC sensor signal transduction histidine kinase
PAS/PAC sensor signal transduction histidine kinase n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HPA8_PARL1
SCNpilot_expt_1000_bf_scaffold_7372_curated_17
unknown

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comp(11502..11690)
DNA (189bp) protein (63aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7372_curated_18
unknown

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comp(12006..12227)
DNA (222bp) protein (74aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_7372_curated_19
Asticcacaulis excentricus, Asticcacaulis, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12613..12723)
DNA (111bp) protein (37aa)
ferredoxin; K04755 ferredoxin, 2Fe-2S
Ferredoxin n=1 Tax=Asticcacaulis excentricus (strain ATCC 15261 / DSM 4724 / VKM B-1370 / CB 48) RepID=E8RNZ9_ASTEC
Ferredoxin {ECO:0000313|EMBL:ADU11912.1}; TaxID=573065 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Asticcacaulis.;" source="Asticcacaulis excentricus (strain ATCC 15261 / DSM 4724 / VKM B-1370 /; CB 48).;"
SCNpilot_expt_1000_bf_scaffold_7372_curated_20
Brevundimonas abyssalis, Brevundimonas, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13017..13280)
DNA (264bp) protein (88aa)
Ferredoxin reductase n=1 Tax=Brevundimonas abyssalis TAR-001 RepID=U3AJC1_9CAUL
Ferredoxin reductase {ECO:0000313|EMBL:GAD57774.1}; TaxID=1391729 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Brevundimonas.;" source="Brevundimonas abyssalis TAR-001.;"
ferredoxin reductase; K00529 ferredoxin--NAD+ reductase [EC:1.18.1.3]
Displaying 20 items

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