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SCNpilot_expt_1000_bf_scaffold_11007_curated

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_11007_curated_1
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..1270
DNA (1269bp) protein (423aa)
DEAD/DEAH box helicase; K11927 ATP-dependent RNA helicase RhlE [EC:3.6.4.13] rbh
DEAD/DEAH box helicase domain protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HW11_PARL1 rbh
DEAD/DEAH box helicase domain protein {ECO:0000313|EMBL:ABS64094.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_11007_curated_2
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1270..1725
DNA (456bp) protein (152aa)
UPI0003CE97F7 related cluster n=1 Tax=unknown RepID=UPI0003CE97F7
UPF0178 protein X772_25575 {ECO:0000256|HAMAP-Rule:MF_00489}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
hypothetical protein; K09768 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_11007_curated_3
Chloracidobacterium thermophilum, Chloracidobacterium, Acidobacteria, Bacteria

Not on your lists

1730..3148
DNA (1419bp) protein (473aa)
hypothetical protein n=1 Tax=Singularimonas variicoloris RepID=UPI00036C151C rbh
hypothetical protein rbh
UPF0061 protein Cabther_B0692 {ECO:0000256|HAMAP-Rule:MF_00692}; TaxID=981222 species="Bacteria; Acidobacteria; Acidobacteria subdivision 4; Chloracidobacterium.;" source="Chloracidobacterium thermophilum (strain B).;"
SCNpilot_expt_1000_bf_scaffold_11007_curated_4
Starkeya novella, Starkeya, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3290..3907)
DNA (618bp) protein (206aa)
aldehyde dehydrogenase; K00135 succinate-semialdehyde dehydrogenase (NADP+) [EC:1.2.1.16]
Aldehyde Dehydrogenase n=1 Tax=Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 / NBRC 12443 / NCIB 9113) RepID=D7AAQ5_STAND
Aldehyde Dehydrogenase {ECO:0000313|EMBL:ADH90922.1}; TaxID=639283 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Xanthobacteraceae; Starkeya.;" source="Starkeya novella (strain ATCC 8093 / DSM 506 / CCM 1077 / IAM 12100 /; NBRC 12443 / NCIB 9113).;"
SCNpilot_expt_1000_bf_scaffold_11007_curated_5
GWF1_Rhodobacteraceae_65_7_curated, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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4094..4285
DNA (192bp) protein (64aa)
Tax=GWF1_Rhodobacteraceae_65_7_curated
SCNpilot_expt_1000_bf_scaffold_11007_curated_6
Sphingobium chinhatense, Sphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(4843..5433)
DNA (591bp) protein (197aa)
Alcohol dehydrogenase n=1 Tax=Sphingobium sp. HDIP04 RepID=T0H8C1_9SPHN
Alcohol dehydrogenase {ECO:0000313|EMBL:EPR17485.1}; TaxID=1346790 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingobium.;" source="Sphingobium chinhatense IP26.;"
adh; alcohol dehydrogenase (EC:1.1.1.1)
SCNpilot_expt_1000_bf_scaffold_11007_curated_7
unknown

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5572..5688
DNA (117bp) protein (39aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_11007_curated_8
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6047..7072)
DNA (1026bp) protein (342aa)
(R)-2-hydroxyacid dehydrogenase; K05884 (R)-2-hydroxyacid dehydrogenase [EC:1.1.1.272] rbh
(R)-2-hydroxyacid dehydrogenase n=1 Tax=Rhodopseudomonas palustris (strain BisB18) RepID=Q21D51_RHOPB rbh
(R)-2-hydroxyacid dehydrogenase {ECO:0000313|EMBL:ABD85685.1}; EC=1.1.1.272 {ECO:0000313|EMBL:ABD85685.1};; TaxID=316056 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain BisB18).;"
SCNpilot_expt_1000_bf_scaffold_11007_curated_9
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7208..7858
DNA (651bp) protein (217aa)
GntR family transcriptional regulator
Transcriptional regulator, GntR family n=1 Tax=Caulobacter sp. (strain K31) RepID=B0T8Z0_CAUSK
Transcriptional regulator, GntR family {ECO:0000313|EMBL:ABZ72907.1}; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_expt_1000_bf_scaffold_11007_curated_10
Roseomonas cervicalis, Roseomonas, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7855..8325)
DNA (471bp) protein (157aa)
Demethylmenaquinone methyltransferase n=1 Tax=Roseomonas cervicalis ATCC 49957 RepID=D5RQZ7_9PROT
Demethylmenaquinone methyltransferase {ECO:0000313|EMBL:EFH10283.1}; EC=3.7.1.2 {ECO:0000313|EMBL:EFH10283.1};; TaxID=525371 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Roseomonas.;" source="Roseomonas cervicalis ATCC 49957.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_11007_curated_11
unknown

Not on your lists

8392..8532
DNA (141bp) protein (47aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_11007_curated_12
Afipia sp. 1NLS2, Afipia, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8578..9510)
DNA (933bp) protein (311aa)
Dihydrodipicolinate synthetase n=1 Tax=Afipia sp. 1NLS2 RepID=D6VAA2_9BRAD rbh
Dihydrodipicolinate synthetase {ECO:0000313|EMBL:EFI50396.1}; TaxID=666684 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Afipia.;" source="Afipia sp. 1NLS2.;"
dihydrodipicolinate synthetase; K01714 dihydrodipicolinate synthase [EC:4.2.1.52] rbh
SCNpilot_expt_1000_bf_scaffold_11007_curated_13
unknown

Not on your lists

comp(9903..11387)
DNA (1485bp) protein (495aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_11007_curated_14
unknown

Not on your lists

comp(11573..11701)
DNA (129bp) protein (43aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_11007_curated_15
Massilia sp. JS1662, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11936..12418
DNA (483bp) protein (161aa)
TonB-dependent receptor {ECO:0000313|EMBL:KGF83337.1}; TaxID=1519190 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. JS1662.;"
TonB-denpendent receptor n=1 Tax=Sphingomonas sp. PAMC 26605 RepID=UPI00026CDDEF
hypothetical protein
Displaying 15 items

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