ggKbase home page

SCNpilot_expt_1000_bf_scaffold_8168_curated

Search features with annotation key words

Displaying 15 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_8168_curated_1
Rhodovulum sulfidophilum, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3..206)
DNA (204bp) protein (68aa)
DNA-directed DNA polymerase {ECO:0000256|SAAS:SAAS00057170}; EC=2.7.7.7 {ECO:0000256|SAAS:SAAS00057170};; TaxID=35806 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sulfidophilum (Rhodobacter sulfidophilus).;"
DNA polymerase III subunit alpha; K02337 DNA polymerase III subunit alpha [EC:2.7.7.7]
DNA polymerase III, alpha subunit n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HY20_PARL1
SCNpilot_expt_1000_bf_scaffold_8168_curated_2
Candidatus Phaeomarinobacter ectocarpi, Candidatus Phaeomarinobacter, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1212..1934)
DNA (723bp) protein (241aa)
Lipoprotein releasing system ATP-binding protein LolD {ECO:0000313|EMBL:CDO60992.1}; TaxID=1458461 species="Bacteria; Proteobacteria; Alphaproteobacteria; Candidatus Phaeomarinobacter.;" source="Candidatus Phaeomarinobacter ectocarpi.;"
ABC transporter ATP-binding protein n=1 Tax=Nitratireductor aquibiodomus RA22 RepID=I5C213_9RHIZ
lolD; lipoprotein-releasing system ATP-binding protein; K09810 lipoprotein-releasing system ATP-binding protein [EC:3.6.3.-]
SCNpilot_expt_1000_bf_scaffold_8168_curated_3
Oceanibaculum indicum, Oceanibaculum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1927..3150)
DNA (1224bp) protein (408aa)
Lipoprotein ABC transporter n=1 Tax=Oceanibaculum indicum P24 RepID=K2JLK6_9PROT rbh
Lipoprotein ABC transporter {ECO:0000313|EMBL:EKE75297.1}; TaxID=1207063 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Oceanibaculum.;" source="Oceanibaculum indicum P24.;"
lipoprotein releasing system; K09808 lipoprotein-releasing system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_8168_curated_4
Stigmatella aurantiaca, Stigmatella, Myxococcales, Deltaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3320..4534
DNA (1215bp) protein (405aa)
Drug resistance transporter Bcr/CflA subfamily id=12495807 bin=THIO_MID species=Pseudomonas sp. Chol1 genus=Pseudomonas taxon_order=Pseudomonadales taxon_class=Gammaproteobacteria phylum=Proteobacteria tax=THIO_MID organism_group=Betaproteobacteria rbh
drug resistance transporter; K07552 MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein
Drug resistance transporter, Bcr/CflA family {ECO:0000313|EMBL:ADO70710.1}; TaxID=378806 species="Bacteria; Proteobacteria; Deltaproteobacteria; Myxococcales; Cystobacterineae; Cystobacteraceae; Stigmatella.;" source="Stigmatella aurantiaca (strain DW4/3-1).;"
SCNpilot_expt_1000_bf_scaffold_8168_curated_5
Rhodomicrobium udaipurense, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


4572..5360
DNA (789bp) protein (263aa)
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01571}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01571};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01571}; TaxID=858455 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium udaipurense JA643.;"
prolyl-tRNA synthetase (EC:6.1.1.15); K01881 prolyl-tRNA synthetase [EC:6.1.1.15] rbh
Proline--tRNA ligase n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I470_RHOVT rbh
SCNpilot_expt_1000_bf_scaffold_8168_curated_6
Rhodomicrobium vannielii, Rhodomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5417..6106
DNA (690bp) protein (230aa)
Suspect SCG annotation. See neighboring gene [SCNpilot_expt_1000_bf_scaffold_8168_curated_5].
prolyl-tRNA synthetase (EC:6.1.1.15); K01881 prolyl-tRNA synthetase [EC:6.1.1.15]
Proline--tRNA ligase n=1 Tax=Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 / LMG 4299) RepID=E3I470_RHOVT
Proline--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_01571}; EC=6.1.1.15 {ECO:0000256|HAMAP-Rule:MF_01571};; Prolyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_01571}; TaxID=648757 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Rhodomicrobium.;" source="Rhodomicrobium vannielii (strain ATCC 17100 / ATH 3.1.1 / DSM 162 /; LMG 4299).;"
SCNpilot_expt_1000_bf_scaffold_8168_curated_7
unknown

Not on your lists

comp(6113..6250)
DNA (138bp) protein (46aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8168_curated_8
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6345..7934)
DNA (1590bp) protein (530aa)
Conserved protein {ECO:0000313|EMBL:GAK44548.1}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
hypothetical protein
Uncharacterized protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HWJ7_PARL1
SCNpilot_expt_1000_bf_scaffold_8168_curated_9
GWA2_Curvibacter_64_110_curated, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

8876..9874
DNA (999bp) protein (333aa)
Tax=GWA2_Curvibacter_64_110_curated
hypothetical protein n=1 Tax=Lamprocystis purpurea RepID=UPI00036FC34D rbh
permease; K06901 putative MFS transporter, AGZA family, xanthine/uracil permease rbh
SCNpilot_expt_1000_bf_scaffold_8168_curated_10
unknown

Not on your lists

comp(9871..10113)
DNA (243bp) protein (81aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8168_curated_11
Parvibaculum lavamentivorans, Parvibaculum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10115..11647)
DNA (1533bp) protein (511aa)
beta-lactamase domain-containing protein; K07021 rbh
Beta-lactamase domain protein n=1 Tax=Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966) RepID=A7HY34_PARL1 rbh
Beta-lactamase domain protein {ECO:0000313|EMBL:ABS64817.1}; TaxID=402881 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhodobiaceae; Parvibaculum.;" source="Parvibaculum lavamentivorans (strain DS-1 / DSM 13023 / NCIMB 13966).;"
SCNpilot_expt_1000_bf_scaffold_8168_curated_12
Thalassospira sp. HJ, Thalassospira, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12531..12827)
DNA (297bp) protein (99aa)
hypothetical protein n=1 Tax=Sandarakinorhabdus sp. AAP62 RepID=UPI00030B82C0
Biotin {ECO:0000313|EMBL:KJE36976.1}; TaxID=1616823 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Thalassospira.;" source="Thalassospira sp. HJ.;"
biotin--acetyl-CoA-carboxylase ligase; K03524 BirA family transcriptional regulator, biotin operon repressor / biotin-[acetyl-CoA-carboxylase] ligase [EC:6.3.4.15]
SCNpilot_expt_1000_bf_scaffold_8168_curated_13
unknown

Not on your lists

12980..13225
DNA (246bp) protein (82aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_8168_curated_14
alpha proteobacterium MA2, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13242..14675)
DNA (1434bp) protein (478aa)
hypothetical protein n=1 Tax=Amorphus coralli RepID=UPI00038035BA rbh
NADH-quinone oxidoreductase subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; EC=1.6.5.11 {ECO:0000256|HAMAP-Rule:MF_00445};; NADH dehydrogenase I subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; NDH-1 subunit N {ECO:0000256|HAMAP-Rule:MF_00445}; TaxID=1333998 species="Bacteria; Proteobacteria; Alphaproteobacteria.;" source="alpha proteobacterium MA2.;"
proton-translocating NADH-quinone oxidoreductase subunit N; K00343 NADH-quinone oxidoreductase subunit N [EC:1.6.5.3] rbh
SCNpilot_expt_1000_bf_scaffold_8168_curated_15
Hyphomicrobium sp. MC1, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14672..15070)
DNA (399bp) protein (133aa)
NADH:ubiquinone oxidoreductase subunit M n=1 Tax=Methylosinus sp. LW4 RepID=UPI00037B7E74
nuoM; NADH-quinone oxidoreductase subunit M (EC:1.6.5.3); K00342 NADH-quinone oxidoreductase subunit M [EC:1.6.5.3]
NADH-quinone oxidoreductase chain M (NADH dehydrogenase I, chain M) {ECO:0000313|EMBL:CCB66103.1}; EC=1.6.5.3 {ECO:0000313|EMBL:CCB66103.1};; TaxID=717785 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium sp. (strain MC1).;"
Displaying 15 items

View Taxonomy