ggKbase home page

SCNpilot_expt_1000_bf_scaffold_4391_curated

Search features with annotation key words

Displaying 17 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4391_curated_1
Caulobacter sp. K31, Caulobacter, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2..1417
DNA (1416bp) protein (472aa)
capsular exopolysaccharide family protein n=1 Tax=Maricaulis sp. JL2009 RepID=UPI0003A8B4EF
non-specific protein-tyrosine kinase (EC:2.7.10.2)
Non-specific protein-tyrosine kinase {ECO:0000313|EMBL:ABZ73936.1}; EC=2.7.10.2 {ECO:0000313|EMBL:ABZ73936.1};; TaxID=366602 species="Bacteria; Proteobacteria; Alphaproteobacteria; Caulobacterales; Caulobacteraceae; Caulobacter.;" source="Caulobacter sp. (strain K31).;"
SCNpilot_expt_1000_bf_scaffold_4391_curated_2
Novosphingobium sp. Rr 2-17, Novosphingobium, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1550..1879)
DNA (330bp) protein (110aa)
Glutamate synthase (NADPH/NADH) small chain n=1 Tax=Novosphingobium sp. Rr 2-17 RepID=I9C3N6_9SPHN
Glutamate synthase (NADPH/NADH) small chain {ECO:0000313|EMBL:EIZ78412.1}; TaxID=555793 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Novosphingobium.;" source="Novosphingobium sp. Rr 2-17.;"
glutamate synthase (NADH) small subunit (EC:1.4.1.14); K00266 glutamate synthase (NADPH/NADH) small chain [EC:1.4.1.13 1.4.1.14]
SCNpilot_expt_1000_bf_scaffold_4391_curated_3
R_Alphaproteobacteria_66_14, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2067..3020)
DNA (954bp) protein (318aa)
Tax=RIFCSPHIGHO2_12_FULL_Alphaproteobacteria_66_14_curated
dihydropyrimidine dehydrogenase subunit A n=1 Tax=Sphingobium sp. YL23 RepID=UPI0003A94006 rbh
glutamate synthase (NADH) small subunit (EC:1.4.1.14); K00266 glutamate synthase (NADPH/NADH) small chain [EC:1.4.1.13 1.4.1.14] rbh
SCNpilot_expt_1000_bf_scaffold_4391_curated_4
R_Phenylobacterium_70_10, Caulobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3031..7752)
DNA (4722bp) protein (1574aa)
Tax=RIFCSPHIGHO2_01_FULL_Phenylobacterium_70_10_curated
glutamate synthase (NADH) large subunit (EC:1.4.1.14); K00265 glutamate synthase (NADPH/NADH) large chain [EC:1.4.1.13 1.4.1.14] rbh
Glutamate synthase (NADH) large subunit n=1 Tax=Sphingomonas wittichii (strain RW1 / DSM 6014 / JCM 10273) RepID=A5V2X0_SPHWW rbh
SCNpilot_expt_1000_bf_scaffold_4391_curated_5
Nitratireductor pacificus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7882..8391)
DNA (510bp) protein (170aa)
Polysaccharide export protein n=1 Tax=Nitratireductor pacificus pht-3B RepID=K2MSB1_9RHIZ
Polysaccharide export protein {ECO:0000313|EMBL:EKF20242.1}; TaxID=391937 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor pacificus pht-3B.;"
hypothetical protein; K01991 polysaccharide export outer membrane protein
SCNpilot_expt_1000_bf_scaffold_4391_curated_6
Rhodanobacter fulvus, Rhodanobacter, Xanthomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8475..8855)
DNA (381bp) protein (127aa)
Polysaccharide deacetylase n=1 Tax=Rhodanobacter fulvus Jip2 RepID=I4W118_9GAMM
Polysaccharide deacetylase {ECO:0000313|EMBL:EIL93159.1}; TaxID=1163408 species="Bacteria; Proteobacteria; Gammaproteobacteria; Xanthomonadales; Xanthomonadaceae; Rhodanobacter.;" source="Rhodanobacter fulvus Jip2.;"
glycosyl transferase
SCNpilot_expt_1000_bf_scaffold_4391_curated_7
unknown

Not on your lists

9000..9716
DNA (717bp) protein (239aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4391_curated_8
unknown

Not on your lists

9883..10044
DNA (162bp) protein (54aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4391_curated_9
unknown

Not on your lists

10023..11957
DNA (1935bp) protein (645aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4391_curated_10
Hyphomicrobium denitrificans, Hyphomicrobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12024..12425
DNA (402bp) protein (134aa)
hypothetical protein n=1 Tax=Hyphomicrobium zavarzinii RepID=UPI00035CD5AC
hypothetical protein; K06940
Uncharacterized protein {ECO:0000313|EMBL:ADJ23981.1}; TaxID=582899 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Hyphomicrobiaceae; Hyphomicrobium.;" source="Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB; 11706 / TK 0415).;"
SCNpilot_expt_1000_bf_scaffold_4391_curated_11
unknown

Not on your lists

comp(13731..13964)
DNA (234bp) protein (78aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4391_curated_12
unknown

Not on your lists

comp(14004..14309)
DNA (306bp) protein (102aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4391_curated_13
Caenispirillum salinarum, Caenispirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15205..16554
DNA (1350bp) protein (450aa)
Malate synthase G n=1 Tax=Caenispirillum salinarum AK4 RepID=K9HM45_9PROT rbh
Malate synthase G {ECO:0000256|HAMAP-Rule:MF_00641, ECO:0000256|RuleBase:RU003572}; EC=2.3.3.9 {ECO:0000256|HAMAP-Rule:MF_00641, ECO:0000256|RuleBase:RU003572};; TaxID=1238182 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Caenispirillum.;" source="Caenispirillum salinarum AK4.;"
malate synthase G (fragment) rbh
SCNpilot_expt_1000_bf_scaffold_4391_curated_14
Bradyrhizobium sp. YR681, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16657..16890
DNA (234bp) protein (78aa)
Uncharacterized protein n=1 Tax=Bradyrhizobium sp. YR681 RepID=J3CNQ8_9BRAD
Uncharacterized protein {ECO:0000313|EMBL:EJN09489.1}; TaxID=1144344 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. YR681.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4391_curated_15
Methylobacterium extorquens, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17060..18163)
DNA (1104bp) protein (368aa)
3-isopropylmalate dehydrogenase (EC:1.1.1.85); K00052 3-isopropylmalate dehydrogenase [EC:1.1.1.85] rbh
3-isopropylmalate dehydrogenase n=1 Tax=Methylobacterium extorquens (strain CM4 / NCIMB 13688) RepID=B7KNZ7_METC4 rbh
3-isopropylmalate dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445}; EC=1.1.1.85 {ECO:0000256|HAMAP-Rule:MF_01033, ECO:0000256|RuleBase:RU004445};; 3-IPM-DH {ECO:0000256|HAMAP-Rule:MF_01033}; Beta-IPM dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01033}; TaxID=440085 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium extorquens (strain CM4 / NCIMB 13688); (Methylobacterium chloromethanicum).;"
SCNpilot_expt_1000_bf_scaffold_4391_curated_16
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18212..18817)
DNA (606bp) protein (202aa)
3-isopropylmalate dehydratase small subunit {ECO:0000256|HAMAP-Rule:MF_01031}; EC=4.2.1.33 {ECO:0000256|HAMAP-Rule:MF_01031};; Alpha-IPM isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; Isopropylmalate isomerase {ECO:0000256|HAMAP-Rule:MF_01031}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
leuD; isopropylmalate isomerase small subunit (EC:4.2.1.33); K01704 3-isopropylmalate/(R)-2-methylmalate dehydratase small subunit [EC:4.2.1.33 4.2.1.35] rbh
3-isopropylmalate dehydratase small subunit n=1 Tax=Magnetospirillum magneticum (strain AMB-1 / ATCC 700264) RepID=LEUD_MAGSA rbh
SCNpilot_expt_1000_bf_scaffold_4391_curated_17
Sphingomonas sp. WHSC-8, Sphingomonas, Sphingomonadales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18927..19829)
DNA (903bp) protein (301aa)
MFS transporter permease {ECO:0000313|EMBL:AJP72675.1}; TaxID=1609977 species="Bacteria; Proteobacteria; Alphaproteobacteria; Sphingomonadales; Sphingomonadaceae; Sphingomonas.;" source="Sphingomonas sp. WHSC-8.;"
MFS transporter permease n=1 Tax=Sphingobium ummariense RL-3 RepID=T0J5X8_9SPHN rbh
putative MFS permease rbh
Displaying 17 items

View Taxonomy