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SCNpilot_expt_1000_bf_scaffold_2427_curated

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Displaying 13 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2427_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3..521
DNA (519bp) protein (173aa)
Putative ATPase {ECO:0000313|EMBL:EYR80053.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ATP/GTP-binding protein n=1 Tax=Rhizobium giardinii RepID=UPI0003807619
hypothetical protein; K06918
SCNpilot_expt_1000_bf_scaffold_2427_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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518..2155
DNA (1638bp) protein (546aa)
UPF0283 membrane protein SHLA_57c00020 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D847_9RHIZ rbh
UPF0283 membrane protein SHLA_1c002340 {ECO:0000256|HAMAP-Rule:MF_01085}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K08990 putative membrane protein rbh
SCNpilot_expt_1000_bf_scaffold_2427_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2159..2674)
DNA (516bp) protein (172aa)
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase FolK n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CJ89_9RHIZ rbh
2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase FolK {ECO:0000313|EMBL:EYR80056.1}; EC=2.7.6.3 {ECO:0000313|EMBL:EYR80056.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
folK; putative 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase (EC:2.7.6.3); K00950 2-amino-4-hydroxy-6-hydroxymethyldihydropteridine diphosphokinase [EC:2.7.6.3]
SCNpilot_expt_1000_bf_scaffold_2427_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2664..3032)
DNA (369bp) protein (123aa)
Dihydroneopterin aldolase FolB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EZM3_9RHIZ
Dihydroneopterin aldolase FolB {ECO:0000313|EMBL:EYR80057.1}; EC=4.1.2.25 {ECO:0000313|EMBL:EYR80057.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
folB; dihydroneopterin aldolase (EC:4.1.2.25); K01633 dihydroneopterin aldolase [EC:4.1.2.25]
SCNpilot_expt_1000_bf_scaffold_2427_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(3029..3928)
DNA (900bp) protein (300aa)
Dihydropteroate synthase Sul n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D3P7_9RHIZ rbh
Dihydropteroate synthase {ECO:0000256|RuleBase:RU361205}; Short=DHPS {ECO:0000256|RuleBase:RU361205};; EC=2.5.1.15 {ECO:0000256|RuleBase:RU361205};; Dihydropteroate pyrophosphorylase {ECO:0000256|RuleBase:RU361205}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
folP; dihydropteroate synthase; K00796 dihydropteroate synthase [EC:2.5.1.15] rbh
SCNpilot_expt_1000_bf_scaffold_2427_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4067..4687
DNA (621bp) protein (207aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D852_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR80059.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2427_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5138..5458)
DNA (321bp) protein (107aa)
2Fe-2S ferredoxin FdxB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZB9_9RHIZ
2 Fe-2S ferredoxin FdxB {ECO:0000313|EMBL:EYR80060.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ferredoxin; K04755 ferredoxin, 2Fe-2S
SCNpilot_expt_1000_bf_scaffold_2427_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5647..6015)
DNA (369bp) protein (123aa)
HPt domain-containing protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CJ95_9RHIZ
HPt domain-containing protein {ECO:0000313|EMBL:EYR80061.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
two-component regulator HPt domain-containing protein
SCNpilot_expt_1000_bf_scaffold_2427_curated_9
unknown

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comp(6585..6893)
DNA (309bp) protein (103aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2427_curated_10
unknown

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comp(6921..7202)
DNA (282bp) protein (94aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2427_curated_11
Streptococcus sanguinis, Streptococcus, Lactobacillales, Bacilli, Firmicutes, Bacteria

Not on your lists

comp(7263..11114)
DNA (3852bp) protein (1284aa)
Streptococcal hemagglutinin n=2 Tax=Streptococcus sanguinis RepID=F9E196_STRSA
Streptococcal hemagglutinin {ECO:0000313|EMBL:EGQ20389.1}; TaxID=997356 species="Bacteria; Firmicutes; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus.;" source="Streptococcus sanguinis ATCC 29667.;"
srpA; platelet-binding glycoprotein
SCNpilot_expt_1000_bf_scaffold_2427_curated_12
unknown

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comp(11226..11462)
DNA (237bp) protein (79aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2427_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11760..11975
DNA (216bp) protein (72aa)
Apolipoprotein A1/A4/E {ECO:0000313|EMBL:EYR80062.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative kinesin-like protein
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens CCNWGS0286 RepID=G6XNT8_RHIRD
Displaying 13 items

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