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SCNpilot_expt_1000_bf_scaffold_15094_curated

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Displaying 9 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_15094_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2..151)
DNA (150bp) protein (50aa)
DNA gyrase inhibitor YacG n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D0N7_9RHIZ
DNA gyrase inhibitor YacG {ECO:0000256|HAMAP-Rule:MF_00649, ECO:0000256|SAAS:SAAS00085446}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
zinc-binding protein; K09862 hypothetical protein
SCNpilot_expt_1000_bf_scaffold_15094_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(153..773)
DNA (621bp) protein (207aa)
Maf-like protein maf n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CW32_9RHIZ rbh
Maf-like protein maf {ECO:0000256|HAMAP-Rule:MF_00528}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
maf; Maf-like protein; K06287 septum formation protein rbh
SCNpilot_expt_1000_bf_scaffold_15094_curated_3
Agrobacterium albertimagni, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(867..1085)
DNA (219bp) protein (73aa)
translation initiation factor IF-1
Translation initiation factor IF-1 n=16 Tax=Rhizobiales RepID=IF1_RHIME
Translation initiation factor IF-1 {ECO:0000256|HAMAP-Rule:MF_00075}; TaxID=1156935 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium albertimagni AOL15.;"
SCNpilot_expt_1000_bf_scaffold_15094_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1231..1695)
DNA (465bp) protein (155aa)
Putative arsenate reductase (Phosphatase) protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CBQ0_9RHIZ
Putative arsenate reductase (Phosphatase) protein {ECO:0000313|EMBL:EYR83386.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
protein tyrosine phosphatase
SCNpilot_expt_1000_bf_scaffold_15094_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(1700..2176)
DNA (477bp) protein (159aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CRL9_9RHIZ rbh
UPF0262 protein SHLA_67c000280 {ECO:0000256|HAMAP-Rule:MF_00678}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_15094_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2180..2317)
DNA (138bp) protein (46aa)
Histidinol dehydrogenase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D0N2_9RHIZ
Histidinol dehydrogenase {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099}; Short=HDH {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; EC=1.1.1.23 {ECO:0000256|HAMAP-Rule:MF_01024, ECO:0000256|PIRNR:PIRNR000099};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hisD; histidinol dehydrogenase; K00013 histidinol dehydrogenase [EC:1.1.1.23]
SCNpilot_expt_1000_bf_scaffold_15094_curated_7
unknown

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2781..2885
DNA (105bp) protein (35aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_15094_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3496..3933)
DNA (438bp) protein (146aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CW27_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR83389.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_15094_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4109..5401)
DNA (1293bp) protein (431aa)
UDP-N-acetylglucosamine 1-carboxyvinyltransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ETF7_9RHIZ rbh
UDP-N-acetylglucosamine 1-carboxyvinyltransferase {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344}; EC=2.5.1.7 {ECO:0000256|HAMAP-Rule:MF_00111, ECO:0000256|SAAS:SAAS00085344};; Enoylpyruvate transferase {ECO:0000256|HAMAP-Rule:MF_00111}; UDP-N-acetylglucosamine enolpyruvyl transferase {ECO:0000256|HAMAP-Rule:MF_00111}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
murA; UDP-N-acetylglucosamine 1-carboxyvinyltransferase; K00790 UDP-N-acetylglucosamine 1-carboxyvinyltransferase [EC:2.5.1.7] rbh
Displaying 9 items

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