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SCNpilot_expt_1000_bf_scaffold_6433_curated

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Displaying 8 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6433_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2..895
DNA (894bp) protein (298aa)
Trehalose import ATP-binding protein SugC {ECO:0000313|EMBL:EYR83897.1}; EC=3.6.3.- {ECO:0000313|EMBL:EYR83897.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
sugar ABC transporter ATPase n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00036877F1 rbh
sugar ABC transporter ATP-binding protein; K02023 multiple sugar transport system ATP-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_6433_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1492..2373
DNA (882bp) protein (294aa)
Putative glucose-methanol-choline oxidoreductase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CCL9_9RHIZ
Choline dehydrogenase {ECO:0000313|EMBL:EYR83896.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative dehydrogenase
SCNpilot_expt_1000_bf_scaffold_6433_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2374..4020
DNA (1647bp) protein (549aa)
L-sorbose 1-dehydrogenase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CLZ8_9RHIZ rbh
Choline dehydrogenase {ECO:0000313|EMBL:EYR83895.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
dehydrogenase rbh
SCNpilot_expt_1000_bf_scaffold_6433_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4094..4723
DNA (630bp) protein (210aa)
Putative hydrolase protein, haloacid dehalogenase-like family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EJU8_9RHIZ rbh
Putative hydrolase protein, haloacid dehalogenase-like family {ECO:0000313|EMBL:EYR83894.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative hydrolase, haloacid dehalogenase-like family; K01560 2-haloacid dehalogenase [EC:3.8.1.2]
SCNpilot_expt_1000_bf_scaffold_6433_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4720..5502
DNA (783bp) protein (261aa)
Putative transcriptional regulator protein, DeoR family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C251_9RHIZ rbh
Putative transcriptional regulator protein, DeoR family {ECO:0000313|EMBL:EYR83893.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative DeoR family transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_6433_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5852..7702
DNA (1851bp) protein (617aa)
Putative transporter protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EWF2_9RHIZ rbh
Putative transporter protein {ECO:0000313|EMBL:EYR83891.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative transporter protein rbh
SCNpilot_expt_1000_bf_scaffold_6433_curated_7
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7996..10152
DNA (2157bp) protein (719aa)
FMN-binding protein {ECO:0000313|EMBL:KDP72992.1}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
Regulatory protein NosR n=1 Tax=Achromobacter cycloclastes RepID=O68476_ACHCY rbh
FMN-binding domain-containing protein rbh
SCNpilot_expt_1000_bf_scaffold_6433_curated_8
Achromobacter cycloclastes, Achromobacter, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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10172..10462
DNA (291bp) protein (97aa)
Nitrous-oxide reductase n=3 Tax=Proteobacteria RepID=NOSZ_ACHCY
Nitrous-oxide reductase; EC=1.7.2.4;; N(2)OR; N2O reductase; Flags: Precursor;; TaxID=223 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Achromobacter.;" source="Achromobacter cycloclastes.;"
nitrous-oxide reductase (EC:1.7.99.6); K00376 nitrous-oxide reductase [EC:1.7.2.4]
truncated, N-terminal only. Connects to SCNpilot_expt_1000_bf_scaffold_8355_curated_8 Rose Kantor (12/9/15)
Displaying 8 items

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