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SCNpilot_expt_1000_bf_scaffold_4659_curated

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Displaying 22 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4659_curated_1
Mesorhizobium amorphae, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3..1118)
DNA (1116bp) protein (372aa)
phosphoglycerate dehydrogenase n=1 Tax=Rhizobium phaseoli RepID=UPI00036972A5 rbh
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit {ECO:0000313|EMBL:EHH02942.1}; TaxID=1082933 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium amorphae CCNWGS0123.;"
D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding subunit rbh
SCNpilot_expt_1000_bf_scaffold_4659_curated_2
unknown

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1688..2311
DNA (624bp) protein (208aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4659_curated_3
Mesorhizobium sp. LSHC420B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2314..2793)
DNA (480bp) protein (160aa)
3-demethylubiquinone-9 3-methyltransferase n=1 Tax=Mesorhizobium sp. LSHC420B00 RepID=V7FIF5_9RHIZ
3-demethylubiquinone-9 3-methyltransferase {ECO:0000313|EMBL:ESX78584.1}; TaxID=1287292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSHC420B00.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4659_curated_4
Ochrobactrum anthropi, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(2820..3263)
DNA (444bp) protein (148aa)
activator of Hsp90 ATPase 1 family protein
Activator of Hsp90 ATPase 1 family protein n=1 Tax=Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168) RepID=A6X1N7_OCHA4
Activator of Hsp90 ATPase 1 family protein {ECO:0000313|EMBL:ABS15141.1}; TaxID=439375 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum anthropi (strain ATCC 49188 / DSM 6882 / NCTC 12168).;"
SCNpilot_expt_1000_bf_scaffold_4659_curated_5
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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3763..4746
DNA (984bp) protein (328aa)
Periplasmic-binding protein/LacI transcriptional regulator n=1 Tax=Nitratireductor indicus C115 RepID=K2N5H4_9RHIZ rbh
Periplasmic-binding protein/LacI transcriptional regulator {ECO:0000313|EMBL:EKF42653.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
periplasmic-binding protein/LacI transcriptional regulator; K10439 ribose transport system substrate-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_4659_curated_6
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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4850..5872
DNA (1023bp) protein (341aa)
Galactitol 1-phosphate 5-dehydrogenase n=1 Tax=Nitratireductor indicus C115 RepID=K2PNM9_9RHIZ rbh
Galactitol 1-phosphate 5-dehydrogenase {ECO:0000313|EMBL:EKF42652.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
galactitol-1-phosphate 5-dehydrogenase rbh
SCNpilot_expt_1000_bf_scaffold_4659_curated_7
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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5932..7443
DNA (1512bp) protein (504aa)
Carbohydrate kinase n=1 Tax=Nitratireductor indicus C115 RepID=K2P5Q1_9RHIZ rbh
Carbohydrate kinase {ECO:0000313|EMBL:EKF42651.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
carbohydrate kinase rbh
SCNpilot_expt_1000_bf_scaffold_4659_curated_8
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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7446..8432
DNA (987bp) protein (329aa)
DeoR family transcriptional regulator n=1 Tax=Nitratireductor indicus C115 RepID=K2NTP3_9RHIZ rbh
DeoR family transcriptional regulator {ECO:0000313|EMBL:EKF42650.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
DeoR family transcriptional regulator rbh
SCNpilot_expt_1000_bf_scaffold_4659_curated_9
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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8429..9922
DNA (1494bp) protein (498aa)
ABC transporter-like protein n=1 Tax=Nitratireductor indicus C115 RepID=K2NXN0_9RHIZ rbh
ABC transporter-like protein {ECO:0000313|EMBL:EKF42649.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
ABC transporter-like protein; K10441 ribose transport system ATP-binding protein [EC:3.6.3.17] rbh
SCNpilot_expt_1000_bf_scaffold_4659_curated_10
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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9915..10916
DNA (1002bp) protein (334aa)
Inner-membrane translocator n=1 Tax=Nitratireductor indicus C115 RepID=K2N5H0_9RHIZ rbh
Inner-membrane translocator {ECO:0000313|EMBL:EKF42648.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
inner-membrane translocator; K10440 ribose transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_4659_curated_11
unknown

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comp(10832..11500)
DNA (669bp) protein (223aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_4659_curated_12
Nitratireductor indicus, Nitratireductor, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11909..14290
DNA (2382bp) protein (794aa)
Aldehyde dehydrogenase {ECO:0000313|EMBL:EKF42646.1}; TaxID=1231190 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Nitratireductor.;" source="Nitratireductor indicus C115.;"
Aldehyde dehydrogenase n=1 Tax=Nitratireductor indicus C115 RepID=K2P5P8_9RHIZ rbh
aldehyde dehydrogenase; K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] rbh
SCNpilot_expt_1000_bf_scaffold_4659_curated_13
Martelella endophytica, Martelella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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14295..15014
DNA (720bp) protein (240aa)
hypothetical protein n=1 Tax=Ahrensia kielensis RepID=UPI00037ACCEA
Uncharacterized protein {ECO:0000313|EMBL:AJY45935.1}; TaxID=1486262 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Martelella.;" source="Martelella endophytica.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_4659_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(15171..16538)
DNA (1368bp) protein (456aa)
Acety/propionyl-CoA carboxylase, alpha subunit {ECO:0000313|EMBL:EYR82627.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Acetyl-CoA carboxylase n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CGK3_9RHOB rbh
acetyl-CoA carboxylase biotin carboxylase subunit (EC:6.4.1.2); K01961 acetyl-CoA carboxylase, biotin carboxylase subunit [EC:6.4.1.2 6.3.4.14]
SCNpilot_expt_1000_bf_scaffold_4659_curated_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16535..16783)
DNA (249bp) protein (83aa)
Biotin carboxyl carrier protein {ECO:0000313|EMBL:EYR82626.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
biotin/lipoyl attachment domain-containing protein
Biotin/lipoyl attachment domain-containing protein n=2 Tax=Delftia RepID=A9BP89_DELAS
SCNpilot_expt_1000_bf_scaffold_4659_curated_16
Bradyrhizobium sp. DFCI-1, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(16810..18129)
DNA (1320bp) protein (440aa)
Feruloyl-CoA synthase n=1 Tax=Bradyrhizobium sp. DFCI-1 RepID=U1GV62_9BRAD
Feruloyl-CoA synthase {ECO:0000313|EMBL:ERF81442.1}; TaxID=1230476 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DFCI-1.;"
Agxt2l1; Alanine--glyoxylate aminotransferase 2-like 1 (EC:2.6.1.-)
SCNpilot_expt_1000_bf_scaffold_4659_curated_17
Rhodobacter sp. CACIA14H1, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(18133..19218)
DNA (1086bp) protein (362aa)
Aminotransferase n=1 Tax=Rhodobacter sp. CACIA14H1 RepID=V7EE64_9RHOB rbh
Aminotransferase {ECO:0000313|EMBL:ESW59396.1}; TaxID=1408890 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. CACIA14H1.;"
aminoglycoside phosphotransferase
SCNpilot_expt_1000_bf_scaffold_4659_curated_18
Bradyrhizobium sp. DOA9, Bradyrhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(19211..20185)
DNA (975bp) protein (325aa)
hypothetical protein n=1 Tax=alpha proteobacterium SCGC AB-629-F11 RepID=UPI0003682DBA rbh
Urea amidolyase {ECO:0000313|EMBL:GAJ37525.1}; TaxID=1126627 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Bradyrhizobium.;" source="Bradyrhizobium sp. DOA9.;"
Urea carboxylase (EC:6.3.4.6)
SCNpilot_expt_1000_bf_scaffold_4659_curated_19
Burkholderia andropogonis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(20182..21045)
DNA (864bp) protein (288aa)
Transporter {ECO:0000313|EMBL:KKB62026.1}; TaxID=28092 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia andropogonis.;"
hypothetical protein n=1 Tax=Arhodomonas aquaeolei RepID=UPI00036D590C
Urea carboxylase (EC:6.3.4.6)
SCNpilot_expt_1000_bf_scaffold_4659_curated_20
Mesorhizobium huakuii, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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21206..21868
DNA (663bp) protein (221aa)
Bacterial regulatory s, gntR family protein {ECO:0000313|EMBL:AID28520.1}; TaxID=763057 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium huakuii 7653R.;"
transcriptional regulator
Transcriptional regulator n=1 Tax=Mesorhizobium australicum (strain LMG 24608 / HAMBI 3006 / WSM2073) RepID=L0KRC5_MESAW
SCNpilot_expt_1000_bf_scaffold_4659_curated_21
Burkholderia andropogonis, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

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comp(21895..22743)
DNA (849bp) protein (283aa)
Uncharacterized protein {ECO:0000313|EMBL:KKB62027.1}; TaxID=28092 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia andropogonis.;"
binding-protein-dependent transporters inner membrane component; K11070 spermidine/putrescine transport system permease protein
Binding-protein-dependent transport system inner membrane protein n=1 Tax=Natrialba magadii (strain ATCC 43099 / DSM 3394 / NCIMB 2190 / MS3) RepID=D3SVW4_NATMM
SCNpilot_expt_1000_bf_scaffold_4659_curated_22
Aureimonas altamirensis, Aureimonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22748..23371)
DNA (624bp) protein (208aa)
Uncharacterized protein {ECO:0000313|EMBL:KHJ54895.1}; TaxID=370622 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Aurantimonadaceae; Aureimonas.;" source="Aureimonas altamirensis.;"
Binding-protein-dependent transport systems inner membrane component n=1 Tax=Halobacterium sp. DL1 RepID=G4IIP3_9EURY
potH2; polyamine ABC transporter permease PotH; K11071 spermidine/putrescine transport system permease protein
Displaying 22 items

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