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SCNpilot_expt_1000_bf_scaffold_4003_curated_3

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 2046..2762

Top 3 Functional Annotations

Value Algorithm Source
Ribonuclease PH n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYV1_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 97.9
  • Coverage: 238.0
  • Bit_score: 464
  • Evalue 5.70e-128
  • rbh
Ribonuclease PH {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104182}; Short=RNase PH {ECO:0000256|HAMAP-Rule:MF_00564};; EC=2.7.7.56 {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104188};; tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_00564}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 97.9
  • Coverage: 238.0
  • Bit_score: 464
  • Evalue 8.00e-128
rph; ribonuclease PH (EC:2.7.7.56); K00989 ribonuclease PH [EC:2.7.7.56] similarity KEGG
DB: KEGG
  • Identity: 89.9
  • Coverage: 238.0
  • Bit_score: 438
  • Evalue 1.80e-120
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 717
ATGCGGCCGTCCGGCAGAAAAACCGATCAGATGCGCAAGGTTTCCTTCGAGCGCAACATCTCCAAGCATGCCGAGGGATCCTGTCTCGTCAAGTTCGGCGACACGCATGTGCTGGTGACGGCAAGCCTGGAAGACAAGACCCCGCCATGGCTGCGCAACAGCGGCAAGGGCTGGGTGACGGCCGAATACGGCATGCTGCCGCGCGCCACCGGCGAACGCATGCGGCGCGAAGCCGCGGCCGGCAAGCAGGGCGGCCGCACGCAGGAGATCCAGCGCCTCATCGGCCGGTCGCTGCGCGCCGTCGTCGATCTGGAAGCGCTCGGCGAGCGTCAGATCACCGTAGACTGCGACGTCATCCAGGCCGACGGCGGCACGCGCACGGCCTCCATCACCGGCGCGTGGATCGCCCTTCACGACTGCCTGAAGTGGATGGAAGCACGCAGCATGATCAAGGTGGAGAAGGTCCTGAAGGATCACGTCGCCGCGATCTCCTGCGGCATCTTCGCCGCCCAGTCGGTGATCGACCTCGACTATCTGGAAGACTCCGCCGCCGAGACCGACGCCAACTTCGTCATGACCGGCTCGGGCGGCATCGTCGAGATCCAGGGCACCGCGGAAGGCAAGCCCTTCACGGAGGAGGAATTCTCCAGCCTGATGGCGCTCGCCCGGGGCGGCATCGCCGACCTCGTCGCCCTGCAGAAGCAGGCGATCGCCTGA
PROTEIN sequence
Length: 239
MRPSGRKTDQMRKVSFERNISKHAEGSCLVKFGDTHVLVTASLEDKTPPWLRNSGKGWVTAEYGMLPRATGERMRREAAAGKQGGRTQEIQRLIGRSLRAVVDLEALGERQITVDCDVIQADGGTRTASITGAWIALHDCLKWMEARSMIKVEKVLKDHVAAISCGIFAAQSVIDLDYLEDSAAETDANFVMTGSGGIVEIQGTAEGKPFTEEEFSSLMALARGGIADLVALQKQAIA*