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SCNpilot_expt_1000_bf_scaffold_4003_curated

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Displaying 21 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_4003_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(94..717)
DNA (624bp) protein (208aa)
Protein GrpE n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CRQ7_9RHIZ rbh
Protein GrpE {ECO:0000256|HAMAP-Rule:MF_01151, ECO:0000256|RuleBase:RU000639}; HSP-70 cofactor {ECO:0000256|HAMAP-Rule:MF_01151}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
heat shock protein GrpE; K03687 molecular chaperone GrpE rbh
SCNpilot_expt_1000_bf_scaffold_4003_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(837..1646)
DNA (810bp) protein (270aa)
Heat-inducible transcription repressor HrcA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CHI7_9RHIZ rbh
Heat-inducible transcription repressor HrcA {ECO:0000256|HAMAP-Rule:MF_00081, ECO:0000256|SAAS:SAAS00101987}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hrcA; Heat-inducible transcription repressor hrcA; K03705 heat-inducible transcriptional repressor rbh
SCNpilot_expt_1000_bf_scaffold_4003_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2046..2762
DNA (717bp) protein (239aa)
Ribonuclease PH n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYV1_9RHIZ rbh
Ribonuclease PH {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104182}; Short=RNase PH {ECO:0000256|HAMAP-Rule:MF_00564};; EC=2.7.7.56 {ECO:0000256|HAMAP-Rule:MF_00564, ECO:0000256|SAAS:SAAS00104188};; tRNA nucleotidyltransferase {ECO:0000256|HAMAP-Rule:MF_00564}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
rph; ribonuclease PH (EC:2.7.7.56); K00989 ribonuclease PH [EC:2.7.7.56] rbh
SCNpilot_expt_1000_bf_scaffold_4003_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2776..3192
DNA (417bp) protein (139aa)
Lactoylglutathione lyase-like lyase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D7N2_9RHIZ
Lactoylglutathione lyase-like lyase {ECO:0000313|EMBL:EYR83300.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
bleomycin resistance protein
SCNpilot_expt_1000_bf_scaffold_4003_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


3532..3858
DNA (327bp) protein (109aa)
Non-canonical purine NTP pyrophosphatase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D367_9RHIZ
Non-canonical purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020486}; EC=3.6.1.19 {ECO:0000256|HAMAP-Rule:MF_01405, ECO:0000256|SAAS:SAAS00020468};; Non-standard purine NTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate diphosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; Nucleoside-triphosphate pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_01405}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinel
rdgB; nucleoside-triphosphatase
SCNpilot_expt_1000_bf_scaffold_4003_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3865..5058
DNA (1194bp) protein (398aa)
Oxygen-independent coproporphyrinogen-III oxidase-like protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EZ69_9RHIZ rbh
Oxygen-independent coproporphyrinogen-III oxidase-like protein {ECO:0000313|EMBL:EYR83302.1}; EC=1.3.99.- {ECO:0000313|EMBL:EYR83302.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
oxygen-independent coproporphyrinogen III oxidase; K02495 oxygen-independent coproporphyrinogen III oxidase [EC:1.3.99.22] rbh
SCNpilot_expt_1000_bf_scaffold_4003_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(5259..6818)
DNA (1560bp) protein (520aa)
Chromosomal replication initiator protein DnaA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D361_9RHIZ rbh
Chromosomal replication initiator protein DnaA {ECO:0000256|HAMAP-Rule:MF_00377, ECO:0000256|SAAS:SAAS00009621}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
chromosomal replication initiator protein dnaA; K02313 chromosomal replication initiator protein rbh
SCNpilot_expt_1000_bf_scaffold_4003_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists


comp(7689..7955)
DNA (267bp) protein (89aa)
30S ribosomal protein S20 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CE58_9RHIZ
30S ribosomal protein S20 {ECO:0000256|HAMAP-Rule:MF_00500}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
rpsT; 30S ribosomal protein S20; K02968 small subunit ribosomal protein S20
SCNpilot_expt_1000_bf_scaffold_4003_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(8223..8996)
DNA (774bp) protein (258aa)
Putative enoyl-CoA hydratase FadB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EVL5_9RHIZ rbh
Putative enoyl-CoA hydratase FadB {ECO:0000313|EMBL:EYR83308.1}; EC=4.2.1.17 {ECO:0000313|EMBL:EYR83308.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
enoyl-CoA hydratase; K01692 enoyl-CoA hydratase [EC:4.2.1.17] rbh
SCNpilot_expt_1000_bf_scaffold_4003_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9015..9905)
DNA (891bp) protein (297aa)
Formamidopyrimidine-DNA glycosylase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CYF3_9RHIZ rbh
Formamidopyrimidine-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00103, ECO:0000256|SAAS:SAAS00020854}; Short=Fapy-DNA glycosylase {ECO:0000256|HAMAP-Rule:MF_00103};; EC=3.2.2.23 {ECO:0000256|HAMAP-Rule:MF_00103};; DNA-(apurinic or apyrimidinic site) lyase MutM {ECO:0000256|HAMAP-Rule:MF_00103}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
mutM; protein MutM; K10563 formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18] rbh
SCNpilot_expt_1000_bf_scaffold_4003_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10081..10857
DNA (777bp) protein (259aa)
Ubiquinone/menaquinone biosynthesis methyltransferase ubiE n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D333_9RHIZ rbh
Ubiquinone/menaquinone biosynthesis C-methyltransferase UbiE {ECO:0000256|HAMAP-Rule:MF_01813}; EC=2.1.1.163 {ECO:0000256|HAMAP-Rule:MF_01813};; EC=2.1.1.201 {ECO:0000256|HAMAP-Rule:MF_01813};; 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase {ECO:0000256|HAMAP-Rule:MF_01813}; Demethylmenaquinone methyltransferase {ECO:0000256|HAMAP-Rule:MF_01813}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ubiE; ubiquinone/menaquinone biosynthesis methyltransferase; K03183 ubiquinone/menaquinone biosynthesis methyltransferase [EC:2.1.1.163 2.1.1.201] rbh
SCNpilot_expt_1000_bf_scaffold_4003_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10895..12469
DNA (1575bp) protein (525aa)
Putative ubiquinone biosynthesis protein UbiB n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CU38_9RHIZ rbh
Probable protein kinase UbiB {ECO:0000256|SAAS:SAAS00063507}; EC=2.7.-.- {ECO:0000256|SAAS:SAAS00063486};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
2-polyprenylphenol 6-hydroxylase; K03688 ubiquinone biosynthesis protein rbh
SCNpilot_expt_1000_bf_scaffold_4003_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12567..13370
DNA (804bp) protein (268aa)
Ion transporter {ECO:0000313|EMBL:EYR83313.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI000368CFB6
putative ionic voltage-gated channel protein rbh
SCNpilot_expt_1000_bf_scaffold_4003_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

13457..14641
DNA (1185bp) protein (395aa)
Coenzyme A biosynthesis bifunctional protein CoaBC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CWP1_9RHIZ rbh
Coenzyme A biosynthesis bifunctional protein CoaBC {ECO:0000313|EMBL:EYR83315.1}; EC=4.1.1.36 {ECO:0000313|EMBL:EYR83315.1};; EC=6.3.2.5 {ECO:0000313|EMBL:EYR83315.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
coaBC; bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; K13038 phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase [EC:4.1.1.36 6.3.2.5] rbh
SCNpilot_expt_1000_bf_scaffold_4003_curated_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14634..15455)
DNA (822bp) protein (274aa)
Putative glutamine amidotransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CMI6_9RHIZ rbh
Putative glutamine amidotransferase {ECO:0000313|EMBL:EYR83316.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative glutamine amidotransferase; K07008 glutamine amidotransferase rbh
SCNpilot_expt_1000_bf_scaffold_4003_curated_16
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15644..16048
DNA (405bp) protein (135aa)
Putative glutathione-dependent formaldehyde-activating enzyme n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C9X8_9RHIZ
Putative glutathione-dependent formaldehyde-activating enzyme {ECO:0000313|EMBL:EYR83318.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative glutathione-dependent formaldehyde-activating enzyme
SCNpilot_expt_1000_bf_scaffold_4003_curated_17
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16052..16852
DNA (801bp) protein (267aa)
AraC family transcriptional regulator {ECO:0000313|EMBL:EYR83319.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
AraC family transcriptional regulator n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HJ32_9RHIZ
AraC family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_4003_curated_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16929..17537
DNA (609bp) protein (203aa)
Lysine exporter LysE/YggA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5F089_9RHIZ rbh
Lysine exporter LysE/YggA {ECO:0000313|EMBL:EYR83320.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Probable RhtB family transporter, amino acid efflux
SCNpilot_expt_1000_bf_scaffold_4003_curated_19
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17541..18344)
DNA (804bp) protein (268aa)
Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CK37_9RHIZ rbh
Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase {ECO:0000313|EMBL:EYR83321.1}; EC=2.7.1.49 {ECO:0000313|EMBL:EYR83321.1};; EC=2.7.4.7 {ECO:0000313|EMBL:EYR83321.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
thiD; putative phosphomethylpyrimidine kinase (EC:2.7.4.7); K00941 hydroxymethylpyrimidine/phosphomethylpyrimidine kinase [EC:2.7.1.49 2.7.4.7] rbh
SCNpilot_expt_1000_bf_scaffold_4003_curated_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(18822..20402)
DNA (1581bp) protein (527aa)
Peptide chain release factor 3 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D044_9RHIZ rbh
Peptide chain release factor 3 {ECO:0000256|HAMAP-Rule:MF_00072, ECO:0000256|SAAS:SAAS00089051}; Short=RF-3 {ECO:0000256|HAMAP-Rule:MF_00072};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
prfC; peptide chain release factor 3 rbh
SCNpilot_expt_1000_bf_scaffold_4003_curated_21
Ensifer adhaerens, Ensifer, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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20496..20969
DNA (474bp) protein (158aa)
deoxyuridine 5''''-triphosphate nucleotidohydrolase n=1 Tax=Rhizobium giardinii RepID=UPI0003695638
Deoxyuridine 5'-triphosphate nucleotidohydrolase {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071038}; Short=dUTPase {ECO:0000256|HAMAP-Rule:MF_00116};; EC=3.6.1.23 {ECO:0000256|HAMAP-Rule:MF_00116, ECO:0000256|SAAS:SAAS00071036};; dUTP pyrophosphatase {ECO:0000256|HAMAP-Rule:MF_00116}; TaxID=106592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Ensifer.;" source="Ensifer adhaerens (Sinorhizobium morelense).;"
dut; deoxyuridine 5'-triphosphate nucleotidohydrolase (EC:3.6.1.23); K01520 dUTP pyrophosphatase [EC:3.6.1.23]
Displaying 21 items

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