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SCNpilot_expt_1000_bf_scaffold_4003_curated_20

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(18822..20402)

Top 3 Functional Annotations

Value Algorithm Source
Peptide chain release factor 3 n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D044_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 97.1
  • Coverage: 526.0
  • Bit_score: 1012
  • Evalue 1.20e-292
  • rbh
Peptide chain release factor 3 {ECO:0000256|HAMAP-Rule:MF_00072, ECO:0000256|SAAS:SAAS00089051}; Short=RF-3 {ECO:0000256|HAMAP-Rule:MF_00072};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 97.1
  • Coverage: 526.0
  • Bit_score: 1012
  • Evalue 1.70e-292
prfC; peptide chain release factor 3 similarity KEGG
DB: KEGG
  • Identity: 89.7
  • Coverage: 526.0
  • Bit_score: 953
  • Evalue 2.80e-275
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1581
ATGGCCGAAACCCTTGCCGAGGCGGTCTCCCGCCGCCGCACCTTCGCGATCATCGCGCACCCGGACGCCGGTAAAACCACCCTCACCGAAAAACTCCTCCTCTTCGGCGGCGCCATCCAGCTCGCCGGCGAGGTGAAGGCGAAGAAGGACCGCATCCAGACCCGCTCGGACTGGATGAAGATCGAGCGCGAGCGCGGCATCTCGGTCGTGACCTCGGTGATGACCTTCGAATATGACGGCAACGTCTTCAACATTCTCGATACGCCCGGCCACGAGGACTTCGCCGACGACACCTACCGCACGCTGACGGCGGTGGACGCGGCCGTCATGGTCATCGACGCCGCCAAGGGCATCGAGCCACGCACGCTGAAGCTCTTCGAGGTCTGCCGCCTGCGCGACATTCCGATCATCACCTTCGTCAACAAGATGGACCGCGAGAGCCGCGATCCGTTCGAGATCCTCGACGAGGTGGAGGAAAAGCTCGCGCTCGACACCGCCCCGGTCACCTGGCCGGTCGGCCGCTCGAAGACCTTCTGCGGCTCCTATCACCTCGCCGATCGCACCTTCCGCGGCTCGGACACGCAGGTCCAGCCGGTGAAGATGGACGACGCCGCCGAGGTGGCGAAGCACCTGCCGGAAAACGAGCGGGATGCCTTCATCGAGGAGATGGAGCTTGCCCGCGAGGCCTGCCGCCCGTTCGACCGCGAGGCCTTCCTCGAAGGGCACCTGACGCCGGTCTTCTTCGGCTCGGCGCTCCGCAATTTCGGCGTGCGCGACCTCATCAACGCGCTTGGCGCCTTCGCGCCGCCGCCGCGCGACCAGGTGGCGGATGTGCGCAAGGTCCACGCCTCCGAGGACAGGATGACGGCCTTCGTCTTCAAGATCCAGGCCAACATGGACCCCAACCACCGCGACCGCATCGCCTTTGCCCGCGTCTGCTCCGGCATGCTGGAGCGCGGCATGAAGGTGCGCCTTGCTCGCACGGGCAAGACCATCGGCCTCTCGGCCCCGCAGTTCTTCTTCGCCTCGCAGCGCCAGCTTGCCGATACGGCCTATGCCGGCGACGTGGTGGGCATCCCCAACCACGGGACGCTGCGCATCGGCGATACGCTGACGGAAGGCGAGGCGCTGGTCTTCGAGGGCGTGCCGAACTTCGCGCCGGAAATCCTGCGCCGCGTGCGGCTGGAAGACGCCATGAAGGCCAAGAAACTGAAGGAAGCGCTCCAGCAGATGGCCGAGGAAGGCGTCGTGCAGCTCTTCTCGCCGGAAGACGGCTCGCCCGCCATCGTCGGCGTCGTCGGCGCGCTTCAGCTCGACGTGCTGAAGGAGCGGCTTTCGGCGGAATACGGCCTGCCGGTCTCCTTCGAGATGTCGCGCTTCTCCGTCTGCCGCTGGATTTCTTCCGACAGCGCGGCAGAGCTCGACAAGTTCGTCACCCAGCGCCGCGGCGATATCGCCCGCGACCTCGACGGCGACCCGGTGTTCCTGGCGCAGGACGCCTTCTCTCTGCGCTACGAGGCGGAGCGCTATCCGGCGATCAGGATGGTCGCTATCAAGGAGTATCACGTCACCAAGGCGTGA
PROTEIN sequence
Length: 527
MAETLAEAVSRRRTFAIIAHPDAGKTTLTEKLLLFGGAIQLAGEVKAKKDRIQTRSDWMKIERERGISVVTSVMTFEYDGNVFNILDTPGHEDFADDTYRTLTAVDAAVMVIDAAKGIEPRTLKLFEVCRLRDIPIITFVNKMDRESRDPFEILDEVEEKLALDTAPVTWPVGRSKTFCGSYHLADRTFRGSDTQVQPVKMDDAAEVAKHLPENERDAFIEEMELAREACRPFDREAFLEGHLTPVFFGSALRNFGVRDLINALGAFAPPPRDQVADVRKVHASEDRMTAFVFKIQANMDPNHRDRIAFARVCSGMLERGMKVRLARTGKTIGLSAPQFFFASQRQLADTAYAGDVVGIPNHGTLRIGDTLTEGEALVFEGVPNFAPEILRRVRLEDAMKAKKLKEALQQMAEEGVVQLFSPEDGSPAIVGVVGALQLDVLKERLSAEYGLPVSFEMSRFSVCRWISSDSAAELDKFVTQRRGDIARDLDGDPVFLAQDAFSLRYEAERYPAIRMVAIKEYHVTKA*