ggKbase home page

SCNpilot_expt_1000_bf_scaffold_4003_curated_17

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 16052..16852

Top 3 Functional Annotations

Value Algorithm Source
AraC family transcriptional regulator {ECO:0000313|EMBL:EYR83319.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 74.1
  • Coverage: 266.0
  • Bit_score: 389
  • Evalue 3.60e-105
AraC family transcriptional regulator n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HJ32_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 54.4
  • Coverage: 274.0
  • Bit_score: 284
  • Evalue 1.50e-73
AraC family transcriptional regulator similarity KEGG
DB: KEGG
  • Identity: 53.9
  • Coverage: 267.0
  • Bit_score: 276
  • Evalue 7.70e-72

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 801
GTGGCGGCCGGGCGCTTCCAGCTTTTCAGCACAAGCATTGCCGGCATCGAGGCCGTCTTCGCCGACAGCCGGCATTCCTTCGCCCGCCACAGCCATGACGCCTATGGCGTCGGCGTCATCGAGCGGGGCGCGCAAAGATCGGCGAGCGGGCGCGGCATGGTCGAGGCCGGGGCCGGCCATACGATCACCGTCAATCCCGGCGAGGTGCATGACGGGGCGCCGATCGGCGATGCGCCGCGCGCCTGGCGCATGCTCTACATGCAGCCCGCCATCGTCACGGCCGCGGCAGTGGACATTTTCGAAGGCCGCCCGCGCGAGGAATTCCACGCGCCGGTGCTGGCGGACGAGCGGATCGCCGGGCTCGTCTCGACAACGCTCGCCGCGCTGATCGATCGCGCCGCCGCGCCCCTTGCGGCGGAAGAGCGGCTTTTCCTGCTGCTCGCCGCGCTCCTGCGGGAGGAGACGCCCCGCCCCGACGGCATGGCCCTGCCGGCCGTGGCCCGCGCCCGCGAACGGCTCGACAACGACCCGGCCGCCGCCGTCAGCCTCGAAACGCTTGCCGCCGGATGCGGCATCGGGCGCTTCCGGCTGGTGCGCGATTTCGCCCGCGCGACGGGCCTGACGCCCCATGCCTACCAGCTCCAGCGGCGCACCGAGCTTGCCCGCCGGCTGGTCGCCGCCGGCACGCCGCTTGCCGAGGCGGCAATGGACGCGGGCTTTGCCGACCAGAGCCACATGACGCGCAACTTCACGCAGCGCTACGGCTATACGCCAGGCGCCCTGCGCGCCGCCCGCGCCTGA
PROTEIN sequence
Length: 267
VAAGRFQLFSTSIAGIEAVFADSRHSFARHSHDAYGVGVIERGAQRSASGRGMVEAGAGHTITVNPGEVHDGAPIGDAPRAWRMLYMQPAIVTAAAVDIFEGRPREEFHAPVLADERIAGLVSTTLAALIDRAAAPLAAEERLFLLLAALLREETPRPDGMALPAVARARERLDNDPAAAVSLETLAAGCGIGRFRLVRDFARATGLTPHAYQLQRRTELARRLVAAGTPLAEAAMDAGFADQSHMTRNFTQRYGYTPGALRAARA*