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SCNpilot_expt_1000_bf_scaffold_4003_curated_18

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 16929..17537

Top 3 Functional Annotations

Value Algorithm Source
Lysine exporter LysE/YggA n=1 Tax=Shinella zoogloeoides DD12 RepID=V5F089_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 80.0
  • Coverage: 205.0
  • Bit_score: 309
  • Evalue 2.00e-81
  • rbh
Lysine exporter LysE/YggA {ECO:0000313|EMBL:EYR83320.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 80.0
  • Coverage: 205.0
  • Bit_score: 309
  • Evalue 2.80e-81
Probable RhtB family transporter, amino acid efflux similarity KEGG
DB: KEGG
  • Identity: 58.3
  • Coverage: 204.0
  • Bit_score: 242
  • Evalue 9.40e-62

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 609
ATGACCGCTGAATTCCTGATCACCTCGCTCGTCGTCATCCTGCTTCCGGGCACGGGGGTGATCTATACGCTGGCGCTCGGCATCAGCGGCGGCCTGCGCGCCGGCCTGCTCGCCGCCTTCGGCTGCACGCTCGGCATCGTGCCGCATATCCTCGCCAGCGTCGCCGGCCTTGCCGCCGTACTGCATGCGAGCGCCCTCGCCTTCGAGGTGCTGCGCACTATCGGCGTCGCCTACCTGCTCTTCATCGCCTGGAGCCTGCTGAAGGAGAGCGGGACGCTCGATCCCGGAAAGGAGCCGGTGGAAAAGGCGCTGCGCATCGTGCGCAAGGCCATTCTCACGAACATCCTCAATCCGAAGCTCTCGCTGTTCTTCCTCGCCTTCCTGCCGCAGTTCGTTCCCGCGAATGCGGCCGGCGCCACCGCGCGGATGCTTCTTCTCGGCGGCGTCTTCATGGGGCTGACCTTCCTCGTCTTCGCCGTCTATGCCGCGCTTGCGGCCGGCCTGCGCGAGCAGGTGCTGAGCCGGCCAAGGATCATGGCCTGGACGCAGCGGGGCTTTGCGGCCGCCCTCGGCGTGATGGGCCTCAGGCTCGCGCTGGCGGACCGCTGA
PROTEIN sequence
Length: 203
MTAEFLITSLVVILLPGTGVIYTLALGISGGLRAGLLAAFGCTLGIVPHILASVAGLAAVLHASALAFEVLRTIGVAYLLFIAWSLLKESGTLDPGKEPVEKALRIVRKAILTNILNPKLSLFFLAFLPQFVPANAAGATARMLLLGGVFMGLTFLVFAVYAALAAGLREQVLSRPRIMAWTQRGFAAALGVMGLRLALADR*