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SCNpilot_expt_1000_bf_scaffold_5073_curated_4

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(3756..5255)

Top 3 Functional Annotations

Value Algorithm Source
Sensor protein ZraS n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EZ90_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 88.4
  • Coverage: 449.0
  • Bit_score: 767
  • Evalue 6.60e-219
  • rbh
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 88.4
  • Coverage: 449.0
  • Bit_score: 767
  • Evalue 9.20e-219
integral membrane sensor signal transduction histidine kinase (EC:2.7.3.-) similarity KEGG
DB: KEGG
  • Identity: 64.9
  • Coverage: 441.0
  • Bit_score: 539
  • Evalue 1.20e-150
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1500
ATGGCTGACCGCGGGCATAGCATCCGCCCGGCGCGGTCCGTCCGCTACCGGCTGCTGGCCATCGCGCTCCTGCCCATGCTGGTCATCCTGCCGCTGCTGCTCGGCGTCACGGTCTATCGCTGGAACGCGAAGTTCGATGCGGCGCTGATCTCGAAGGTCAACGGCGACCTCACCATCGCACATCAGTATCTCGCCCATATCCTCGACAATACCGGCGAGCATGTCACCGCGCTCGGCGGCTCGGTACGCTTCCGGGAGGCCGCCGGCGACGGGGCCGCGCTCGACGCCCTCCTCGACGAGGCGCGGGCGCGGCTGGAGCTCGATTTCCTCTATGTGATCGACAGGGAGGGCCGGCTCATGGCGTCTGTCACGGGACAGACCGCAGGCGCGCTTCGCACCGACTGGCCCGTCATCCGCGATGCGCTTGCGGGCCGGCCCTCGACGGGCATCGACATTTTCGACAATGCCGACCTGCGGACGCTCTCCCTCGACCTTGCCGCCCGCGCGCGCGTGCCGCTCGTCCCGACGCCGAACGCCGTTCCGACCGAGCGCACCGAGGAGACGCGCGGCATGGTCGTGCAGAGCGCCAGCCCGGTGAACCTTGGAGATGGGCGCGAGGCTGTGCTTGTCGGCGGCATCCTGCTCAACCAGAACCTCGTTTTCATCGATACGATCAACGATCTCGTCTACCGCGAGGCGAGCCTGCCGGAGGGCAGCCAAGGCACGGCGACGCTGTTCCTCGACGACGTGCGCATCAGCACGAATGTACGCCTCTTCGAGGGGCGCCGGGCACTCGGCACGCGCGTGTCGGCGGCCGTCCGCTCGGCCGTGCTCGGCGAGGGGCAGACCTGGCTCGACAGCGCCTTCGTGGTCAACGACTGGTACATCTCCGCCTACGAGCCTATCGAGGACAGCCGCGGCAAGCGGGTCGGCATGCTCTATGTCGGGTTTCTGGAGGCGCCCTTCACCGCGGCCAAGCACCAGACGGTGCTGACCATCGTCGCCGCGTTCCTCGCGATCACGGCGGCGAGCGTGCCGATCTTCCTGCGCTGGGCGCGCGGCATCTTCGAGCCGCTGGAGCGCGTCGATGCGACCATCGCCAAGGTGGAGAGCGGCGATCTTGGTGCCCGCACCGGCCCGGTCGGCAGCCGGGACGAGATCGGCCGCGTCGCCGTGCATCTCGACGATCTCCTCGACCAGCTCGAACGGAGCGACCGGCAGTTGCGGCGCTGGAACGAGGAGCTGAACGCTCGCGTCGACGAGCGCACCCGGGAGCTGCAGCTCGCCAACCGGCAGCTCGAGGCGACGACGAAGCAGCTCATCATGTCGGAGAAGCTGGCGGCAATNNNNNNNNNNNNNNNNNNNAGATCAACAATCCCATCGCCGTCATGCAGGGCAACCTGGAGGTCGTGCGCGCCGTGGTGGGTGACAGGGCGGAGCTCGCCAAGGTCGAGTTCCAGCTTCTCGACGAGCAGATCCAGCGCATCAGCCAGATCGTGA
PROTEIN sequence
Length: 500
MADRGHSIRPARSVRYRLLAIALLPMLVILPLLLGVTVYRWNAKFDAALISKVNGDLTIAHQYLAHILDNTGEHVTALGGSVRFREAAGDGAALDALLDEARARLELDFLYVIDREGRLMASVTGQTAGALRTDWPVIRDALAGRPSTGIDIFDNADLRTLSLDLAARARVPLVPTPNAVPTERTEETRGMVVQSASPVNLGDGREAVLVGGILLNQNLVFIDTINDLVYREASLPEGSQGTATLFLDDVRISTNVRLFEGRRALGTRVSAAVRSAVLGEGQTWLDSAFVVNDWYISAYEPIEDSRGKRVGMLYVGFLEAPFTAAKHQTVLTIVAAFLAITAASVPIFLRWARGIFEPLERVDATIAKVESGDLGARTGPVGSRDEIGRVAVHLDDLLDQLERSDRQLRRWNEELNARVDERTRELQLANRQLEATTKQLIMSEKLAAXXXXXXXRSTIPSPSCRATWRSCAPWWVTGRSSPRSSSSFSTSRSSASARS*