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SCNpilot_expt_1000_bf_scaffold_5073_curated_3

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(3256..3759)

Top 3 Functional Annotations

Value Algorithm Source
Sensor protein ZraS n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EZ90_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 87.3
  • Coverage: 166.0
  • Bit_score: 290
  • Evalue 1.30e-75
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 87.3
  • Coverage: 166.0
  • Bit_score: 290
  • Evalue 1.90e-75
two-component sensor histidine kinase/response regulator hybrid protein similarity KEGG
DB: KEGG
  • Identity: 60.5
  • Coverage: 167.0
  • Bit_score: 207
  • Evalue 4.70e-51

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 504
GTGACGAAGCTCCTGCAATTCGCCAAGCCGGAGGAATTCGCCGGCTTCGTCGACCGGCACGCGCCGGGCGCGGCGGTGGCCGATTGCCTGCCGCTCGTCCAGCACCTGCTCGCCCGGGCGGCCATCGAGGTGACGCTCGCGGACACGGCCGGACGGCTGGTGCTGATGAACCGCACGGAGCTCCAGCAGGTGGTCGTCAACCTCGTGGTGAACGCCATCCACGCCATGCCGGACGGCGGCAGGCTCGCCATGACGACGCGCGACAGCGACCGCGACGGGCGGCCCGGCGTCGAGATCGTCGTCAGCGACACCGGCATCGGCATGGATCCCGCCGTGGCGGCGAAGGTGTTCGACCCGTTCTTCACCACCAAGCGGCAGGACGGCACGGGCCTCGGCCTCTCCATCAGCCAGACGCTGGTGCGGCGGCAGGGCGGGGCCATCGCCTGCGCCAGCCGCCCTGGCGAGGGCGCCACCTTCACGGTCTGGCTGCCGGAAGCGGAATAG
PROTEIN sequence
Length: 168
VTKLLQFAKPEEFAGFVDRHAPGAAVADCLPLVQHLLARAAIEVTLADTAGRLVLMNRTELQQVVVNLVVNAIHAMPDGGRLAMTTRDSDRDGRPGVEIVVSDTGIGMDPAVAAKVFDPFFTTKRQDGTGLGLSISQTLVRRQGGAIACASRPGEGATFTVWLPEAE*