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SCNpilot_expt_1000_bf_scaffold_5073_curated

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Displaying 18 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5073_curated_1
Thiorhodococcus drewsii, Thiorhodococcus, Chromatiales, Gammaproteobacteria, Proteobacteria, Bacteria

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3..1262
DNA (1260bp) protein (420aa)
Drug resistance transporter, EmrB/QacA subfamily n=1 Tax=Thiorhodococcus drewsii AZ1 RepID=G2E188_9GAMM rbh
Drug resistance transporter, EmrB/QacA subfamily {ECO:0000313|EMBL:EGV31429.1}; TaxID=765913 species="Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Chromatiaceae; Thiorhodococcus.;" source="Thiorhodococcus drewsii AZ1.;"
stp2; multidrug resistance protein Stp rbh
SCNpilot_expt_1000_bf_scaffold_5073_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(1383..3035)
DNA (1653bp) protein (551aa)
Nitrate/nitrite transporter {ECO:0000313|EMBL:EYR82125.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Nitrate/nitrite transporter n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D392_9RHIZ rbh
MFS permease rbh
SCNpilot_expt_1000_bf_scaffold_5073_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3256..3759)
DNA (504bp) protein (168aa)
Sensor protein ZraS n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EZ90_9RHIZ
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
two-component sensor histidine kinase/response regulator hybrid protein
SCNpilot_expt_1000_bf_scaffold_5073_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3756..5255)
DNA (1500bp) protein (500aa)
Sensor protein ZraS n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EZ90_9RHIZ rbh
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
integral membrane sensor signal transduction histidine kinase (EC:2.7.3.-) rbh
SCNpilot_expt_1000_bf_scaffold_5073_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5248..5484)
DNA (237bp) protein (79aa)
Acetoacetate metabolism regulatory protein AtoC n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CIU8_9RHIZ
Acetoacetate metabolism regulatory protein AtoC {ECO:0000313|EMBL:EYR82127.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Fis family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_5073_curated_6
RBG_16_Planctomycetes_55_9_curated, Phycisphaerae, Planctomycetes, Bacteria

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5655..6122
DNA (468bp) protein (156aa)
Tax=RBG_16_Planctomycetes_55_9_curated
Uncharacterized protein n=1 Tax=Myxococcus fulvus (strain ATCC BAA-855 / HW-1) RepID=F8CAZ4_MYXFH id=5224930 bin=16ft_combo_ws3_JS1 species=Myxococcus fulvus genus=Myxococcus taxon_order=Myxococcales taxon_class=Deltaproteobacteria phylum=Proteobacteria tax=16ft_combo_ws3_JS1 organism_group=Unknown_CP organism_desc=Cant place firmly withiin either WS3 or JS1. Part of a large Rifle clade
SCNpilot_expt_1000_bf_scaffold_5073_curated_7
unknown

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6303..6863
DNA (561bp) protein (187aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_5073_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(6827..7216)
DNA (390bp) protein (130aa)
NAD/NADP-dependent betaine aldehyde dehydrogenase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CCY6_9RHIZ
NAD/NADP-dependent betaine aldehyde dehydrogenase {ECO:0000256|HAMAP-Rule:MF_00804}; Short=BADH {ECO:0000256|HAMAP-Rule:MF_00804};; EC=1.2.1.8 {ECO:0000256|HAMAP-Rule:MF_00804};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
betB; betaine aldehyde dehydrogenase
SCNpilot_expt_1000_bf_scaffold_5073_curated_9
Paracoccus denitrificans, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8269..9462)
DNA (1194bp) protein (398aa)
(S)-2-hydroxy-acid oxidase (EC:1.1.3.15); K15054 (S)-mandelate dehydrogenase [EC:1.1.99.31] rbh
(S)-2-hydroxy-acid oxidase n=1 Tax=Paracoccus denitrificans (strain Pd 1222) RepID=A1BC61_PARDP rbh
(S)-2-hydroxy-acid oxidase {ECO:0000313|EMBL:ABL73105.1}; EC=1.1.3.15 {ECO:0000313|EMBL:ABL73105.1};; TaxID=318586 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus denitrificans (strain Pd 1222).;"
SCNpilot_expt_1000_bf_scaffold_5073_curated_10
Pseudomonas cremoricolorata, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

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comp(9523..10896)
DNA (1374bp) protein (458aa)
Uncharacterized protein {ECO:0000313|EMBL:AIR90656.1}; TaxID=157783 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas cremoricolorata.;"
D-2-hydroxyglutarate dehydrogenase n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KHU6_9GAMM rbh
FAD linked oxidase domain-containing protein rbh
SCNpilot_expt_1000_bf_scaffold_5073_curated_11
Pseudomonas cremoricolorata, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(10901..11680)
DNA (780bp) protein (260aa)
Uncharacterized protein {ECO:0000313|EMBL:AIR90657.1}; TaxID=157783 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas cremoricolorata.;"
Alpha-dehydro-beta-deoxy-D-glucarate aldolase n=1 Tax=Mesorhizobium sp. LSJC264A00 RepID=V7FA08_9RHIZ
4-hydroxy-2-oxovalerate aldolase
SCNpilot_expt_1000_bf_scaffold_5073_curated_12
Mesorhizobium sp. LNJC386A00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(11699..12310)
DNA (612bp) protein (204aa)
ABC transporter permease n=1 Tax=Hoeflea sp. 108 RepID=UPI00036D74BA
ABC transporter permease {ECO:0000313|EMBL:ESY35046.1}; TaxID=1287270 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNJC386A00.;"
amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family
SCNpilot_expt_1000_bf_scaffold_5073_curated_13
Mesorhizobium sp. LSJC280B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12512..12862)
DNA (351bp) protein (117aa)
UPI0003CEC32C related cluster n=1 Tax=unknown RepID=UPI0003CEC32C
ABC transporter permease {ECO:0000313|EMBL:ESW86933.1}; TaxID=1287336 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LSJC280B00.;"
polar amino acid ABC transporter permease; K02029 polar amino acid transport system permease protein
SCNpilot_expt_1000_bf_scaffold_5073_curated_14
Labrenzia alexandrii, Labrenzia, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(13298..14074)
DNA (777bp) protein (259aa)
amino acid ABC transporter n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00036328C5
Bacterial extracellular solute-binding protein, family 3 {ECO:0000313|EMBL:EEE44237.1}; TaxID=244592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia alexandrii (strain DSM 17067 / NCIMB 14079 / DFL-11); (Stappia alexandrii).;"
periplasmic binding ABC transporter protein; K02030 polar amino acid transport system substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_5073_curated_15
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(14099..14860)
DNA (762bp) protein (254aa)
Amino acid ABC transporter, ATP-binding protein n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0HKA0_9RHIZ rbh
Amino acid ABC transporter, ATP-binding protein {ECO:0000313|EMBL:EHK58820.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
ABC transporter rbh
SCNpilot_expt_1000_bf_scaffold_5073_curated_16
Mesorhizobium alhagi, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14993..15913
DNA (921bp) protein (307aa)
LysR family transcriptional regulator n=1 Tax=Hoeflea sp. 108 RepID=UPI000370C08B
LysR family transcriptional regulator {ECO:0000313|EMBL:EHK55471.1}; TaxID=1107882 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium alhagi CCNWXJ12-2.;"
transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_5073_curated_17
Ochrobactrum intermedium, Ochrobactrum, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(15929..17359)
DNA (1431bp) protein (477aa)
Aldehyde dehydrogenase SH0913 n=3 Tax=Ochrobactrum RepID=C4WM00_9RHIZ rbh
Aldehyde dehydrogenase {ECO:0000313|EMBL:ELT46657.1}; TaxID=1234597 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Brucellaceae; Ochrobactrum.;" source="Ochrobactrum intermedium M86.;"
aldehyde dehydrogenase; K00128 aldehyde dehydrogenase (NAD+) [EC:1.2.1.3] rbh
SCNpilot_expt_1000_bf_scaffold_5073_curated_18
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(17382..18341)
DNA (960bp) protein (320aa)
Ornithine cyclodeaminase {ECO:0000313|EMBL:KFG70557.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
Ornithine cyclodeaminase/mu-crystallin n=1 Tax=Mesorhizobium alhagi CCNWXJ12-2 RepID=H0I2M3_9RHIZ rbh
ornithine cyclodeaminase/mu-crystallin
Displaying 18 items

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