ggKbase home page

SCNpilot_expt_1000_bf_scaffold_5073_curated_14

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(13298..14074)

Top 3 Functional Annotations

Value Algorithm Source
amino acid ABC transporter n=1 Tax=Rhizobium sp. (strain BR816) RepID=UPI00036328C5 similarity UNIREF
DB: UNIREF100
  • Identity: 59.6
  • Coverage: 255.0
  • Bit_score: 302
  • Evalue 3.10e-79
Bacterial extracellular solute-binding protein, family 3 {ECO:0000313|EMBL:EEE44237.1}; TaxID=244592 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Labrenzia.;" source="Labrenzia alexandrii (strain DSM 17067 / NCIMB 14079 / DFL-11); (Stappia alexandrii).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 58.8
  • Coverage: 257.0
  • Bit_score: 302
  • Evalue 4.30e-79
periplasmic binding ABC transporter protein; K02030 polar amino acid transport system substrate-binding protein similarity KEGG
DB: KEGG
  • Identity: 57.7
  • Coverage: 260.0
  • Bit_score: 299
  • Evalue 1.40e-78

Lists

This feature is not on any list.

Notes

This feature has no notes.

Taxonomy

Labrenzia alexandrii → Labrenzia → Rhodobacterales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 777
ATGAAGAAATCCATACTGGGGCTGGTCGCCGGCGCGGTGCTTGCGATGGCCGGGACGGCCCATGCTGAAAAGACCCGCGTCGGCTTTGCGCCGGAGCCCTATCCGCCGTTCTGGGTGGCGGATGCGAACGGCAACTGGACGGGCTGGGAAGTCGAGATCATCGACGCCGTCTGCACCGAGGCCAAGCTCGACTGCGAGCGCGTGCCCGTCGCCTGGGAGGGGATCATCCCCGCGCTGCTCGGCGGCAAGATCGACATGATCATGAACTCCATGCGCATCAACGACGAGCGCCGCAAGGTCATCGACTTCTCCGACAAGTACTACGAGGTGCCGACCGTCGTCGTCGCGGCCAAGTCCGCCGCCATCGACACGACGCCGGAGAGCATGGACGGCAAGGTCATCGGCGTGCAGGTCTCGACCGGCCAGCAGGCCTATGCGGAGAAGAACTTCGCCGCGAATGCCTCGGAAATCCGCGGCTACAACACCCAGGACGAGGCCTACCAGGATCTTGCCGCCGGCCGCATCGACGTGGTGATCGACGGCGTGGTCGCCATGAACGAGTTCCTCAAGTCGTCGTCCGGCGAATGCTGCGAATCCAAGGGTGTCCTCAAGCGCGATCCGGCGACGCTCGGCGAGGGCTACGGCGTCGGCATGCGCAAGGACGAGCCGGAGTTCAAGGCGAAGATCAACGAGGCCATCGCCGCGATCCGCAAGAACGGCACCTATGACGCCATCACCAAGAAGTACTTCGACTTCGACATCTACGGCGGCGAATGA
PROTEIN sequence
Length: 259
MKKSILGLVAGAVLAMAGTAHAEKTRVGFAPEPYPPFWVADANGNWTGWEVEIIDAVCTEAKLDCERVPVAWEGIIPALLGGKIDMIMNSMRINDERRKVIDFSDKYYEVPTVVVAAKSAAIDTTPESMDGKVIGVQVSTGQQAYAEKNFAANASEIRGYNTQDEAYQDLAAGRIDVVIDGVVAMNEFLKSSSGECCESKGVLKRDPATLGEGYGVGMRKDEPEFKAKINEAIAAIRKNGTYDAITKKYFDFDIYGGE*