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SCNpilot_expt_1000_bf_scaffold_6287_curated_19

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 12297..12890

Top 3 Functional Annotations

Value Algorithm Source
Virulence transcriptional regulatory protein PhoP n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D2T2_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 98.5
  • Coverage: 197.0
  • Bit_score: 396
  • Evalue 2.10e-107
  • rbh
Virulence transcriptional regulatory protein PhoP {ECO:0000313|EMBL:EYR81177.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 98.5
  • Coverage: 197.0
  • Bit_score: 396
  • Evalue 2.90e-107
feuP; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain protein similarity KEGG
DB: KEGG
  • Identity: 91.8
  • Coverage: 196.0
  • Bit_score: 371
  • Evalue 2.20e-100
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 594
GTGGACCAGGCCTTCGACGGCGAGGAAGGCCACTATCTCGGCGATACCGAGCCCTATGACGCCATCATCCTCGATATCGGCCTGCCGGAGATGGACGGCATCACCGTCCTCGAAAAATGGCGTGCGGACGGCAAGTCCATGCCCGTCCTCCTCCTGACGGCCCGCGACCGCTGGAGCGACAAGGTCGCCGGCATCGACGCCGGGGCCGACGACTACGTGGCAAAGCCCTTCCATGTCGAGGAGGTGCTGGCGCGCATCCGCGCCCTCATCCGCCGCGCGGCCGGCCATGCCAGCCCGGATATCGTCTGCGGCCCCGTCCGTCTCGACACCAAGGGCTCCAAGGCGACCGTCAACGGCGAGACGCTCAAGCTCACCTCGCACGAATATCGCCTGCTCTCCTACCTCATGCACCACATGGGCGAGGTCGTCTCGCGCACCGAGCTGGTCGAGCATATGTACGACCAGGATTTCGACCGCGATTCCAATACGATCGAAGTGTTCGTCGGGCGCCTGCGCAAGAAGATCGGCGTCGACCTGATCGAGACCGTGCGCGGCCTCGGCTACCGGATGCAAGCCCCCGCCAATGGCAAATAA
PROTEIN sequence
Length: 198
VDQAFDGEEGHYLGDTEPYDAIILDIGLPEMDGITVLEKWRADGKSMPVLLLTARDRWSDKVAGIDAGADDYVAKPFHVEEVLARIRALIRRAAGHASPDIVCGPVRLDTKGSKATVNGETLKLTSHEYRLLSYLMHHMGEVVSRTELVEHMYDQDFDRDSNTIEVFVGRLRKKIGVDLIETVRGLGYRMQAPANGK*