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SCNpilot_expt_1000_bf_scaffold_6287_curated_20

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: 12880..14298

Top 3 Functional Annotations

Value Algorithm Source
Sensor protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CY64_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 91.7
  • Coverage: 472.0
  • Bit_score: 838
  • Evalue 3.70e-240
  • rbh
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 91.7
  • Coverage: 472.0
  • Bit_score: 838
  • Evalue 5.20e-240
integral membrane sensor signal transduction histidine kinase similarity KEGG
DB: KEGG
  • Identity: 70.7
  • Coverage: 467.0
  • Bit_score: 644
  • Evalue 2.50e-182
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1419
ATGGCAAATAACGCCAGGCGCTCCCGCTCGCTCACCTTCCGCGTCCTCTTCCTCGCCTCCCTCTGGGCCGCGGTGGCGCTCGTCGTCATCGCCGTCGTCATCTCCACGCTCTACAGGCAGAGCGCGGAGAAGAGTTTTCGCGATCTCCTGCGCGCCCAGCTCTACAACGTCATCAACTCGGTCTCGGCGGGTGAGAACACCCGGCTTGCCGGCACGCCGCAGCTCGGGGACCTGCGCTTCTTCCAGCCGAAGTCCGGCTGGTACTGGATCGTCGAGCCGATCGGCGGCTCGCTGGAGGGCGAGGCGCTGACCTCCTCCTCGCTCGGCACCGGCAGCATTCCGATTCCCGATACCGACAGCATTCCCTTCGACACGCGCTACGAACGCTTCTACACCACGGTCGATTCCTTCGGGAACGAGGTGGAGGTGGGCGAGACGGAGGTGGTGCTCGACGACGAGGGGCGGACGGCCCGCTTCCGCGTGGTGGGCAACCGCGACGTGCTGGAAGACGACATCACCGAATTCTCCTCCAGCCTCTACCTGGCGCTCGCCGGCTTCGGCGTCGGCAGCCTCCTGCTCAACGCGGCGGCGATCCTGATCGGCCTCAAGCCGCTCGACCGGGCGCGCAAGGCGCTGGAAAAGATCCGCGCCGGCGAAAGCGAACAGCTCGACGGCGAATTTCCCCGGGAGATCCTGCCTTTGGCGAGCGAGGTGAATGCGCTGATCGACAGCAACCGGCGCATCGTCGAGCGCGCCCGCATGCAGGTCGGCAACCTTGCGCATTCGCTGAAGACGCCGATCGCCGTGCTGCTCAACGAGGCCCGCCTGCTCGCCGCCCCCCAGGGCGACCTCGTGCGCACCCAGGCCGAGGCCATGCAGGACCAGGTGCAATCCTACCTCAACCGCGCCCGCATCGCCGCCCAGCGCGAATCGGTGCTGGCGCGCACCGAGGCGCAGCCCGTCATGGAACGGCTGGTGCGCGTGATGCGGCGGCTGAACGCCGACATGCAGTTTCCGCTGACGGTCGATCCGCCGGGGCTCGTCCTGGCGATGGAACAGCAGGACGTCGAGGAAACCGTCGGCAACCTCTTGGAAAACGCCGCGCGGTACGCCCGCACGTCGGTCGCCGTTCGCGTCACCCCGGCGCCGCCCGACATGCGCGGCACCGACGACGCGCGCAAGAGCTGGATCCTGATCGAGGTCGAGGACGACGGGCCGGGCCTCGAGCCGGATCAGATCCGCGAGGCGATGAAGCGGGGAAAGCGTCTCGACGAAAGCAAGCCGGGCACCGGCCTCGGCCTTTCCATCGTCAGCGAGATCACCTCGGAATACCAGGGGACCTTCGGGCTTTCGCGCGGGGCGGGCGGCGGGCTTCTGGCACGTCTCGTCCTGCCGGCGGTCACAAAGGATGTTGCCTGA
PROTEIN sequence
Length: 473
MANNARRSRSLTFRVLFLASLWAAVALVVIAVVISTLYRQSAEKSFRDLLRAQLYNVINSVSAGENTRLAGTPQLGDLRFFQPKSGWYWIVEPIGGSLEGEALTSSSLGTGSIPIPDTDSIPFDTRYERFYTTVDSFGNEVEVGETEVVLDDEGRTARFRVVGNRDVLEDDITEFSSSLYLALAGFGVGSLLLNAAAILIGLKPLDRARKALEKIRAGESEQLDGEFPREILPLASEVNALIDSNRRIVERARMQVGNLAHSLKTPIAVLLNEARLLAAPQGDLVRTQAEAMQDQVQSYLNRARIAAQRESVLARTEAQPVMERLVRVMRRLNADMQFPLTVDPPGLVLAMEQQDVEETVGNLLENAARYARTSVAVRVTPAPPDMRGTDDARKSWILIEVEDDGPGLEPDQIREAMKRGKRLDESKPGTGLGLSIVSEITSEYQGTFGLSRGAGGGLLARLVLPAVTKDVA*