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SCNpilot_expt_1000_bf_scaffold_6287_curated

Search features with annotation key words

Displaying 24 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_6287_curated_1
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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329..637
DNA (309bp) protein (103aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CC78_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR83856.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
conserved membrane protein of unknown function
SCNpilot_expt_1000_bf_scaffold_6287_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

725..1282
DNA (558bp) protein (186aa)
Phage prohead protease, HK97 family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BWS8_9RHIZ rbh
Prohead peptidase {ECO:0000313|EMBL:EYR83855.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
gp35; phage prohead protease; K06904
SCNpilot_expt_1000_bf_scaffold_6287_curated_3
unknown

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comp(1279..1488)
DNA (210bp) protein (70aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6287_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1626..2519
DNA (894bp) protein (298aa)
Phage major capsid protein, HK97 family {ECO:0000313|EMBL:EYR83854.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
capsid protein n=1 Tax=Rhizobium giardinii RepID=UPI0003604AC0 rbh
phage major capsid protein HK97 family rbh
SCNpilot_expt_1000_bf_scaffold_6287_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2785..3354
DNA (570bp) protein (190aa)
Phage protein PhiE125 gp8 family {ECO:0000313|EMBL:EYR81164.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein n=1 Tax=Rhizobium giardinii RepID=UPI0003601E18
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6287_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3354..3686
DNA (333bp) protein (111aa)
Phage head-tail adaptor, putative, SPP1 family {ECO:0000313|EMBL:EYR81165.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI000374735E
phage head-tail adaptor
SCNpilot_expt_1000_bf_scaffold_6287_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

3683..4090
DNA (408bp) protein (136aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EEI6_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR81166.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6287_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4118..4525
DNA (408bp) protein (136aa)
Phage major tail protein, TP901-1 family n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CGP1_9RHIZ
Phage major tail protein, TP901-1 family {ECO:0000313|EMBL:EYR81167.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Phage major tail protein
SCNpilot_expt_1000_bf_scaffold_6287_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

4525..4881
DNA (357bp) protein (119aa)
Uncharacterized protein {ECO:0000313|EMBL:EYR81168.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Uncharacterized protein n=1 Tax=Rhizobium sp. CF080 PF8_9RHIZ">RepID=J3BPF8_9RHIZ
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6287_curated_10
unknown

Not on your lists

4968..5081
DNA (114bp) protein (38aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6287_curated_11
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5085..5624
DNA (540bp) protein (180aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CCT8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR81170.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6287_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

5948..6556
DNA (609bp) protein (203aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5BXD9_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR81171.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6287_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7062..7409
DNA (348bp) protein (116aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EF93_9RHIZ
Phage protein {ECO:0000313|EMBL:EYR81172.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6287_curated_14
Neorhizobium galegae, Neorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

7843..8904
DNA (1062bp) protein (354aa)
Gene transfer agent (GTA) orfg15, like protein {ECO:0000313|EMBL:CDN53228.1}; TaxID=399 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Neorhizobium.;" source="Rhizobium galegae.;"
Uncharacterized protein (Fragment) n=1 Tax=Rhizobium sp. CF080 RepID=J2IHS3_9RHIZ
conserved exported protein of unknown function
SCNpilot_expt_1000_bf_scaffold_6287_curated_15
unknown

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comp(9658..9852)
DNA (195bp) protein (65aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6287_curated_16
unknown

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comp(9961..10629)
DNA (669bp) protein (223aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_6287_curated_17
Cleome spinosa, Cleome, Brassicales, rosids, Streptophyta, Viridiplantae

Not on your lists

comp(10758..11411)
DNA (654bp) protein (218aa)
Prp9 n=1 Tax=Cleome spinosa RepID=B2BXP0_9ROSI
Prp9 {ECO:0000313|EMBL:ABW81077.1}; TaxID=228870 species="Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliophyta; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Cleome.;" source="Cleome spinosa.;"
SCNpilot_expt_1000_bf_scaffold_6287_curated_18
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

11661..11867
DNA (207bp) protein (69aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CDV0_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR81175.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_6287_curated_19
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12297..12890
DNA (594bp) protein (198aa)
Virulence transcriptional regulatory protein PhoP n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D2T2_9RHIZ rbh
Virulence transcriptional regulatory protein PhoP {ECO:0000313|EMBL:EYR81177.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
feuP; Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain protein rbh
SCNpilot_expt_1000_bf_scaffold_6287_curated_20
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12880..14298
DNA (1419bp) protein (473aa)
Sensor protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CY64_9RHIZ rbh
Histidine kinase {ECO:0000256|SAAS:SAAS00251121}; EC=2.7.13.3 {ECO:0000256|SAAS:SAAS00251121};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
integral membrane sensor signal transduction histidine kinase rbh
SCNpilot_expt_1000_bf_scaffold_6287_curated_21
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14288..14839
DNA (552bp) protein (184aa)
Putative outer-membrane lipoprotein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EVC5_9RHIZ
Putative outer-membrane lipoprotein {ECO:0000313|EMBL:EYR81179.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
lipa1; 17 kDa surface antigen
SCNpilot_expt_1000_bf_scaffold_6287_curated_22
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

14935..16074
DNA (1140bp) protein (380aa)
Cytochrome c-type biogenesis protein CycH n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CDU5_9RHIZ rbh
Cytochrome c-type biogenesis protein CycH {ECO:0000313|EMBL:EYR81180.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
cycH; cytochrome c-type biogenesis protein CycH; K02200 cytochrome c-type biogenesis protein CcmH rbh
SCNpilot_expt_1000_bf_scaffold_6287_curated_23
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

16071..16550
DNA (480bp) protein (160aa)
Cytochrome c-type biogenesis protein CcmE n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CTS0_9RHIZ
Cytochrome c-type biogenesis protein CcmE {ECO:0000256|HAMAP-Rule:MF_01959}; Cytochrome c maturation protein E {ECO:0000256|HAMAP-Rule:MF_01959}; Heme chaperone CcmE {ECO:0000256|HAMAP-Rule:MF_01959}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
Cytochrome c-type biogenesis protein ccmE; K02197 cytochrome c-type biogenesis protein CcmE
SCNpilot_expt_1000_bf_scaffold_6287_curated_24
Rhodopseudomonas palustris, Rhodopseudomonas, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

17057..17251
DNA (195bp) protein (65aa)
cytochrome c-type biogenesis protein CcmF; K02198 cytochrome c-type biogenesis protein CcmF
Cytochrome c-type biogenesis protein CcmF n=1 Tax=Rhodopseudomonas palustris (strain HaA2) RepID=Q2IUG6_RHOP2
Cytochrome c-type biogenesis protein CcmF {ECO:0000313|EMBL:ABD08144.1}; TaxID=316058 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Bradyrhizobiaceae; Rhodopseudomonas.;" source="Rhodopseudomonas palustris (strain HaA2).;"
Displaying 24 items

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