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SCNpilot_expt_1000_bf_scaffold_10554_curated_5

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(3850..5466)

Top 3 Functional Annotations

Value Algorithm Source
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 95.2
  • Coverage: 496.0
  • Bit_score: 952
  • Evalue 2.80e-274
lysS; lysyl-tRNA synthetase (EC:6.1.1.6); K04567 lysyl-tRNA synthetase, class II [EC:6.1.1.6] similarity KEGG
DB: KEGG
  • Identity: 92.0
  • Coverage: 497.0
  • Bit_score: 934
  • Evalue 1.40e-269
  • rbh
Lysine--tRNA ligase n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3M8Z1_RHISN similarity UNIREF
DB: UNIREF100
  • Identity: 92.0
  • Coverage: 497.0
  • Bit_score: 934
  • Evalue 4.40e-269
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1617
ATGCGGCGCCCGCAACACACTCCGGTCCCCTCTCCCCTCGGGGAGAAGGCCAGGGTGAGGGGCAGCAGGCACCAGTTTGCAATTAATTGCGCGGCGAGAGCCGCAACAGGGTTCGAAAAGATGACCGACACGAAGACAGACACCGCCCTCTCCTCCGACCCGACGGAAGTCCGCCGCCAGAAGCTCGGCCAGCTGCGCGAGACGATCGGCGAGGTCTATCCGGCGCATTTCCACCGCACGATGACCAATGCGGAGCTCGCGGAAAAATACGAGGGCCTGGAACCCGACACGGAGAGCGGCGATGTCGTGACCGTCGCCGGCCGCGTCTATTCCTCGCGCAATTCGGGCATGTTCATGGATATCCATGACGCCTCGGGCAAGATCCAGATCTTCTCCCATAAGGACACGACGCCGGAAGAGGCGCGCGCCCTGCTGCCGATGATCGATATCGGCGACATCATCGGCGTGACCGGCGTCGTCCGCCGCACCAAGCGCGGGGAACTCACGATCAACGCGCAGCAGATTGTCATGCTGACGAAGACCCTGCTGCCGATGCCGGAAAAGTGGCACGGCGTTGCCGATGTCGAGATCCGCTACCGCAAGCGCCATCTCGACATCATGACCAACGAGGAATCCAAGCTTCGCTTCCAGCAGCGCTCGAAGATCGTCTCCGGCATCCGCCGCTTCATGGAGAACGACGGCTTCATGGAAGTCGAGACGCCCATGCTGCATTCGGTCTATGGCGGCGCGACGGCAGAACCCTTCAAGACGCACCACAACACGCTGAAGCTCGACATGTACCTGCGCATCGCGCCGGAATTGTTCCTCAAGCGCACGCTGGTCTCCGGGCTCACCGACAAGGTGTTCGAGATCAATCGCAACTTCCGCAACGAGGGCGTGTCGACGCGGCACAATCCCGAATTCACGATGATGGAATGCTACTGGGCCTATGCCGACTACGAGGACATCATGGACCTCGTGGAACGCCTCTTCGCCGAGCTTGCGGTGAAGATCCACGGCTCGACGGAATTTACCTACGGCGACAAGGAACTCTCCTTCAAGGGCCCGTTCAGGCGCGTGCCGATGCCCGATGCCGTCAAGGAAGCAACCGGCCTCGACTTCCTCGCCATGAAGAGCGACGAGGAAGCCCGCGCCGCGGCCAAGGCCGCCGGCTTCGAGGTGGAGAAGGACTGGACCTGGGGCGAGTGCCTTGCCTTCATCTTCGAGGAGAAGGTCGAGCCGACGCTGATCCAGCCGAGCCACGTCACGCATTTCCCGAAGGACATCTCGCCCTTCGCCAAGGAAGTGCCGGGCGAGCCGCGCCTCGTCGAGCGTTTCGAGACCTATTGCAACACCTGGGAACTCGGCAACGCCTTCTCCGAGCTCAACGACCCGGAAGAGCAGCGCGCCCGCATGGTCGAGCAGCTCGAACAGGCCCATGCCCGCGGCGAGAAGGCCAAGCAGCTCGATGACGAATTCCTCGACGCCATCGACCAGGGCATGCCGCCCGCAGGCGGCCTCGGCATCGGCGTCGACCGCCTGATCATGCTCTTGACGAACGCCCCGTCGATCCGCGACGTCATCCTCTTCCCGGCACGCCGGGCGAAGGCGGACTGA
PROTEIN sequence
Length: 539
MRRPQHTPVPSPLGEKARVRGSRHQFAINCAARAATGFEKMTDTKTDTALSSDPTEVRRQKLGQLRETIGEVYPAHFHRTMTNAELAEKYEGLEPDTESGDVVTVAGRVYSSRNSGMFMDIHDASGKIQIFSHKDTTPEEARALLPMIDIGDIIGVTGVVRRTKRGELTINAQQIVMLTKTLLPMPEKWHGVADVEIRYRKRHLDIMTNEESKLRFQQRSKIVSGIRRFMENDGFMEVETPMLHSVYGGATAEPFKTHHNTLKLDMYLRIAPELFLKRTLVSGLTDKVFEINRNFRNEGVSTRHNPEFTMMECYWAYADYEDIMDLVERLFAELAVKIHGSTEFTYGDKELSFKGPFRRVPMPDAVKEATGLDFLAMKSDEEARAAAKAAGFEVEKDWTWGECLAFIFEEKVEPTLIQPSHVTHFPKDISPFAKEVPGEPRLVERFETYCNTWELGNAFSELNDPEEQRARMVEQLEQAHARGEKAKQLDDEFLDAIDQGMPPAGGLGIGVDRLIMLLTNAPSIRDVILFPARRAKAD*