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SCNpilot_expt_1000_bf_scaffold_10554_curated

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Displaying 6 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_10554_curated_1
unknown

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3..98
DNA (96bp) protein (32aa)
Diguanylate cyclase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZF7_9RHIZ
SCNpilot_expt_1000_bf_scaffold_10554_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(106..711)
DNA (606bp) protein (202aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CQB7_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR80175.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_10554_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1364..2608
DNA (1245bp) protein (415aa)
Biphenyl dioxygenase subunit alpha n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CAH9_9RHIZ rbh
Biphenyl dioxygenase subunit alpha {ECO:0000313|EMBL:EYR80174.1}; EC=1.14.12.18 {ECO:0000313|EMBL:EYR80174.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
ring hydroxylating dioxygenase alpha-subunit; K00479 Rieske 2Fe-2S family protein rbh
SCNpilot_expt_1000_bf_scaffold_10554_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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2710..3708
DNA (999bp) protein (333aa)
NADH oxidoreductase Hcr n=1 Tax=Shinella zoogloeoides DD12 RepID=V5ESD5_9RHIZ rbh
NADH oxidoreductase Hcr {ECO:0000313|EMBL:EYR80173.1}; EC=1.-.-.- {ECO:0000313|EMBL:EYR80173.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
oxidoreductase rbh
SCNpilot_expt_1000_bf_scaffold_10554_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3850..5466)
DNA (1617bp) protein (539aa)
Lysine--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336}; EC=6.1.1.6 {ECO:0000256|HAMAP-Rule:MF_00252, ECO:0000256|RuleBase:RU000336};; Lysyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00252}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
lysS; lysyl-tRNA synthetase (EC:6.1.1.6); K04567 lysyl-tRNA synthetase, class II [EC:6.1.1.6] rbh
Lysine--tRNA ligase n=1 Tax=Rhizobium sp. (strain NGR234) RepID=C3M8Z1_RHISN rbh
SCNpilot_expt_1000_bf_scaffold_10554_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5519..6187)
DNA (669bp) protein (223aa)
Glutamate--tRNA ligase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5C863_9RHIZ rbh
Glutamate--tRNA ligase {ECO:0000256|HAMAP-Rule:MF_00022}; EC=6.1.1.17 {ECO:0000256|HAMAP-Rule:MF_00022};; Glutamyl-tRNA synthetase {ECO:0000256|HAMAP-Rule:MF_00022}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
gltX; glutamyl-tRNA synthetase (EC:6.1.1.17); K01885 glutamyl-tRNA synthetase [EC:6.1.1.17] rbh
Displaying 6 items

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