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SCNpilot_expt_1000_bf_scaffold_5613_curated_3

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(3937..4842)

Top 3 Functional Annotations

Value Algorithm Source
RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961}; RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 97.0
  • Coverage: 301.0
  • Bit_score: 578
  • Evalue 4.80e-162
rpoH; RNA polymerase factor sigma-32; K03089 RNA polymerase sigma-32 factor similarity KEGG
DB: KEGG
  • Identity: 90.7
  • Coverage: 300.0
  • Bit_score: 544
  • Evalue 1.70e-152
  • rbh
RNA polymerase sigma factor RpoH n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JRD2_AGRVS similarity UNIREF
DB: UNIREF100
  • Identity: 90.7
  • Coverage: 300.0
  • Bit_score: 544
  • Evalue 5.50e-152
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 906
ATGGCCCGCAATACGCTGCCGTCGATCACGGCCGGAGAAGGCGGTCTCAACCGCTATCTCGACGAAATCCGCAAATTTCCGATGCTTGAGCCGCAGCAGGAATACATGCTCGCCAAGCGTTACCAGGAGCACGGCGACCGCAACGCCGCGCACCAGCTCGTCACCAGCCACCTTCGCCTCGTGGCCAAGATCGCCATGGGTTATCGCGGCTACGGCCTGCCGATCGGCGAAGTCGTTTCCGAGGGCAATGTCGGCCTGATGCAGGCCGTGAAGAAATTCGACCCGGAACGCGGCTTCCGCCTTGCGACCTATGCCATGTGGTGGATCAAGGCCTCGATCCAGGAATATATCCTGCGGTCCTGGTCGCTGGTGAAGATGGGCACGACCGCCAACCAGAAGCGCCTGTTCTTCAACCTGCGCCGCATGAAGGGCAAGATTCAGGCCATCGACGATGGCGACCTGCGCCCCGACCAGGTCAAGGAGATCGCGACCAAGCTCAAGGTCTCCGAGGACGAGGTCGTCTCGATGAACCGCCGCCTGTCCGGCGACGCCTCGCTCAACGCGCCCATCAAGGCGTCGGAAGGCGACAGCGGCCAGTGGCAGGATTGGCTCGTCGACGACCACGACAGCCAGGAACAGACGCTGATCGAGCAGGACGAACTCGAAACGCGCCGCGCCATGCTCGCCCGCGCCATGGGCGTGCTGAACGAGCGCGAGCGCCGCATCTTCGAGGCCCGCCGCCTTGCCGAAGACCCGGTGACGCTGGAGGAGCTCTCCACCGAGTTCGACATCAGCCGCGAGCGCGTCCGCCAGATCGAGGTCCGCGCCTTCGAGAAGGTGCAGGAAGCGGTGCAGAAATACGCGGCCGAGCAGGCCCGCGCCGTCCGCGTCATTGAGGACGCGTAA
PROTEIN sequence
Length: 302
MARNTLPSITAGEGGLNRYLDEIRKFPMLEPQQEYMLAKRYQEHGDRNAAHQLVTSHLRLVAKIAMGYRGYGLPIGEVVSEGNVGLMQAVKKFDPERGFRLATYAMWWIKASIQEYILRSWSLVKMGTTANQKRLFFNLRRMKGKIQAIDDGDLRPDQVKEIATKLKVSEDEVVSMNRRLSGDASLNAPIKASEGDSGQWQDWLVDDHDSQEQTLIEQDELETRRAMLARAMGVLNERERRIFEARRLAEDPVTLEELSTEFDISRERVRQIEVRAFEKVQEAVQKYAAEQARAVRVIEDA*