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SCNpilot_expt_1000_bf_scaffold_5613_curated

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Displaying 16 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_5613_curated_1
Rhizobium sp. AP16, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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236..1531
DNA (1296bp) protein (432aa)
purA; adenylosuccinate synthetase rbh
Adenylosuccinate synthetase n=1 Tax=Rhizobium tropici CIAT 899 RepID=L0LN93_RHITR rbh
Adenylosuccinate synthetase {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520}; Short=AMPSase {ECO:0000256|HAMAP-Rule:MF_00011};; Short=AdSS {ECO:0000256|HAMAP-Rule:MF_00011};; EC=6.3.4.4 {ECO:0000256|HAMAP-Rule:MF_00011, ECO:0000256|RuleBase:RU000520};; IMP--aspartate ligase {ECO:0000256|HAMAP-Rule:MF_00011}; TaxID=1144306 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. AP16.;"
SCNpilot_expt_1000_bf_scaffold_5613_curated_2
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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1601..3865
DNA (2265bp) protein (755aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CZY4_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR80831.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative transmembrane protein rbh
SCNpilot_expt_1000_bf_scaffold_5613_curated_3
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(3937..4842)
DNA (906bp) protein (302aa)
RNA polymerase sigma factor RpoH {ECO:0000256|HAMAP-Rule:MF_00961}; RNA polymerase sigma-32 factor {ECO:0000256|HAMAP-Rule:MF_00961}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
rpoH; RNA polymerase factor sigma-32; K03089 RNA polymerase sigma-32 factor rbh
RNA polymerase sigma factor RpoH n=1 Tax=Agrobacterium vitis (strain S4 / ATCC BAA-846) RepID=B9JRD2_AGRVS rbh
SCNpilot_expt_1000_bf_scaffold_5613_curated_4
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(5081..6121)
DNA (1041bp) protein (347aa)
Pseudouridine synthase RluD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D1P4_9RHIZ rbh
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
rluD; putative ribosomal large subunit pseudouridine synthase D (EC:4.2.1.70); K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] rbh
SCNpilot_expt_1000_bf_scaffold_5613_curated_5
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6141..6530
DNA (390bp) protein (130aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CX46_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80835.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5613_curated_6
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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6620..7321
DNA (702bp) protein (234aa)
tRNA/rRNA methyltransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5EUE7_9RHIZ rbh
tRNA/rRNA methyltransferase {ECO:0000313|EMBL:EYR80836.1}; EC=2.1.1.- {ECO:0000313|EMBL:EYR80836.1};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
tRNA/rRNA methyltransferase rbh
SCNpilot_expt_1000_bf_scaffold_5613_curated_7
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7318..8469)
DNA (1152bp) protein (384aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CSP4_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR80838.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_5613_curated_8
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(8608..9186)
DNA (579bp) protein (193aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D1P0_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR80839.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5613_curated_9
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

9407..10060
DNA (654bp) protein (218aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CX41_9RHIZ rbh
Uncharacterized protein {ECO:0000313|EMBL:EYR80840.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein; K13588 histidine phosphotransferase ChpT rbh
SCNpilot_expt_1000_bf_scaffold_5613_curated_10
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

10179..10541
DNA (363bp) protein (121aa)
Putative two-component response regulator protein {ECO:0000313|EMBL:EYR80841.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative two-component response regulator protein; K03413 two-component system, chemotaxis family, response regulator CheY
Putative two-component response regulator protein n=1 Tax=Rhizobium fredii (strain HH103) RepID=G9ABD1_RHIFH
SCNpilot_expt_1000_bf_scaffold_5613_curated_11
Sinorhizobium meliloti, Sinorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(10695..11387)
DNA (693bp) protein (231aa)
winged helix family two component transcriptional regulator; K13584 two-component system, cell cycle response regulator CtrA rbh
Two component transcriptional regulator, winged helix family n=9 Tax=Rhizobium meliloti RepID=F6BT99_SINMB rbh
CtrA response regulator {ECO:0000313|EMBL:AEH80126.1}; TaxID=707241 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Sinorhizobium/Ensifer group; Sinorhizobium.;" source="Sinorhizobium meliloti (strain SM11).;"
SCNpilot_expt_1000_bf_scaffold_5613_curated_12
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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11917..12267
DNA (351bp) protein (117aa)
Uncharacterized protein {ECO:0000313|EMBL:EYR80843.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
flagellar export protein FliJ n=1 Tax=Rhizobium giardinii RepID=UPI00037F4DB0
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5613_curated_13
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

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comp(12372..12653)
DNA (282bp) protein (94aa)
Putative acetyltransferase n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CR67_9RHIZ
Putative acetyltransferase {ECO:0000313|EMBL:EYR80844.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
putative acetyltransferase
SCNpilot_expt_1000_bf_scaffold_5613_curated_14
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

12795..13244
DNA (450bp) protein (150aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D074_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80845.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
paraquat-inducible PqiA family protein
SCNpilot_expt_1000_bf_scaffold_5613_curated_15
Shinella sp. DD12, Shinella, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13279..13554)
DNA (276bp) protein (92aa)
Uncharacterized protein n=1 Tax=Shinella zoogloeoides DD12 RepID=V5CVN8_9RHIZ
Uncharacterized protein {ECO:0000313|EMBL:EYR80846.1}; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_5613_curated_16
unknown

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comp(14844..14924)
DNA (81bp) protein (27aa)

This feature has no annotations

Displaying 16 items

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