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SCNpilot_expt_1000_bf_scaffold_5613_curated_4

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(5081..6121)

Top 3 Functional Annotations

Value Algorithm Source
Pseudouridine synthase RluD n=1 Tax=Shinella zoogloeoides DD12 RepID=V5D1P4_9RHIZ similarity UNIREF
DB: UNIREF100
  • Identity: 86.5
  • Coverage: 341.0
  • Bit_score: 604
  • Evalue 8.70e-170
  • rbh
Pseudouridine synthase {ECO:0000256|RuleBase:RU362028}; EC=5.4.99.- {ECO:0000256|RuleBase:RU362028};; TaxID=1410620 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Shinella.;" source="Shinella sp. DD12.;" similarity UNIPROT
DB: UniProtKB
  • Identity: 86.5
  • Coverage: 341.0
  • Bit_score: 604
  • Evalue 1.20e-169
rluD; putative ribosomal large subunit pseudouridine synthase D (EC:4.2.1.70); K06180 23S rRNA pseudouridine1911/1915/1917 synthase [EC:5.4.99.23] similarity KEGG
DB: KEGG
  • Identity: 76.2
  • Coverage: 340.0
  • Bit_score: 539
  • Evalue 1.10e-150
  • rbh

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Taxonomy

Shinella sp. DD12 → Shinella → Rhizobiales → Alphaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 1041
ATGAGCATAAGTGAAACGATGACCGACCCCTTTAAAGAAGCCGAAGCCACAAGAAAAGTCCTGACCGTGCCTGAAGACGCCGAAGGGCGCATCGATGCCTGGCTCGCCGCCACGCTCGCCGGCGATTATTCGCGCAGCCGCATCAAGGCGCTGATCGAGGAGGGCGCGGCCCTCGTCAACGGCGCTGTCATGATCGAGCCGAAGCGCAAGGTGCATCCCGGCGACGTCGTCGAATTCACCATGCCCGCCCCGCGCGACCCGGAGCCGAAGGGCGAGGACATCCCGCTCGACGTGCTCTATGAGGACGCCGACCTGATCGTCCTCGTCAAGCCAGCCGGCCTCGTCGTGCATCCCGCCGTCGGCAACTGGACGGGCACGCTCGTCAACGCCCTCATCCACCATTGCGGGGAAAGCCTTTCCGGCATCGGCGGCGTGCGCCGCCCCGGCATCGTNNNNNNNNNNATGGTCGTCGCCAAGAACGACGCGGCCCACCGCCACCTCTCCGACCAGTTCGCCGACCACGGCCGCACCGGCCCGCTGGAACGCGCCTACCAGGCCATCGTCTGGGGCCGCCCGCGCCAGATCAAGGGCACGATCGACGCCCCGCTCGGCCGCGGCGCCGACCGCACGAAACGGGCCGTCAAGCGCGAGGACGCGGACGACGCCCGCGAGGCGATCACCCATTACGAGGTGGTGGAGCGCTACGGCGAGCCCGAGGACGGCACGAGCCTCGCCTCGCTGGTCGAATGCCATCTGGAAACCGGCCGCACGCACCAGATCCGCGTGCACATGGCCCATATCGGCCATCCGCTGATCGGCGACCCGGAATATGGCGCGGCCTTCAAGACCAAGGCGAACCGCCTGCCGGACGAGGCACGCAAGGTGGTGAACGGCTTCCGGCGCCAGGCGCTGCACGCCTTCCTGCTGCAGTTCGAGCATCCCTCGACCGGCGAGACCATGCATTTCGAGGCGCCGCCGCCGGAAGACCTGGAGCGCCTGATCGGGGCGCTGCGCACCATGGATGAAGCGCATAACCCTTGA
PROTEIN sequence
Length: 347
MSISETMTDPFKEAEATRKVLTVPEDAEGRIDAWLAATLAGDYSRSRIKALIEEGAALVNGAVMIEPKRKVHPGDVVEFTMPAPRDPEPKGEDIPLDVLYEDADLIVLVKPAGLVVHPAVGNWTGTLVNALIHHCGESLSGIGGVRRPGIXXXXMVVAKNDAAHRHLSDQFADHGRTGPLERAYQAIVWGRPRQIKGTIDAPLGRGADRTKRAVKREDADDAREAITHYEVVERYGEPEDGTSLASLVECHLETGRTHQIRVHMAHIGHPLIGDPEYGAAFKTKANRLPDEARKVVNGFRRQALHAFLLQFEHPSTGETMHFEAPPPEDLERLIGALRTMDEAHNP*