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SCNpilot_expt_1000_bf_scaffold_2043_curated_9

Organism: scnpilot_dereplicated_Shinella_1

near complete RP 40 / 55 MC: 4 BSCG 43 / 51 MC: 6 ASCG 11 / 38 MC: 1
Location: comp(9033..11156)

Top 3 Functional Annotations

Value Algorithm Source
ABC transporter permease {ECO:0000313|EMBL:ETM67452.1}; TaxID=95619 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain M1).;" similarity UNIPROT
DB: UniProtKB
  • Identity: 68.3
  • Coverage: 707.0
  • Bit_score: 1027
  • Evalue 0.0
Gluconolactonase n=1 Tax=Pseudomonas sp. (strain M1) RepID=L1HUA6_PSEUO similarity UNIREF
DB: UNIREF100
  • Identity: 68.3
  • Coverage: 707.0
  • Bit_score: 1027
  • Evalue 0.0
  • rbh
permease component of ribose/xylose/arabinose/galactoside ABC-type transporters similarity KEGG
DB: KEGG
  • Identity: 67.9
  • Coverage: 704.0
  • Bit_score: 1009
  • Evalue 4.40e-292
  • rbh

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Taxonomy

Pseudomonas sp. M1 → Pseudomonas → Pseudomonadales → Gammaproteobacteria → Proteobacteria → Bacteria

Sequences

DNA sequence
Length: 2124
ATGACCCTCCGCGAGAAACTCACCCGCCTGCGCTACAACAAGGTGCCCGATCACCTGCTGGGCGAAATCCTGTCGAAGAGCTGGGCCGACAATCTCGTGCCCTTCGCCTTCCTCCTCGTGGTGGTGGCCGCCTTCGGCCTTCTCCTGCCGGGCTTCTTCGCGCCCTCCAGCCTCCTCGACACGACGCGCCAGCTCGGCGAATTCCTGATCGTCGTGCTCGGCCTCACGGTCGTCATCATCGGCGGCGGCATCGACCTTTCCGTCGGCTCGATCTTCGCGCTCGCCGCCTTCGCGACGCTTGCCGTCATCTACATCGCCGAAGGGCCGGTCTGGCTGGCGCTGCTCGCCGCGCTCGGGGCCGGTGCGCTTTTCGGCGCGCTCAACGGTTTCCTCGTCGGCTATCTTCGCCTGCGCGCCTTCCTGACCACGCTGGTCACGCTCATCATCGGCCGCTCCCTCTACGATATCCTGATCACCACATGGGGCGCGCGCATCCAGAGCTCGCCGGTGTTCAACGACACGTTCGACCATATCGGCATGGGCGCCGTCTGGGGCCAGCCGATCAGCGCGCTGATCGCGCTCGCCTTCGCGCTCGTCGCCCATCTGGTGATGAGCCGCTCGCGCATCGGCTGGCATTTCACCGCCGTCGGCGGCGCGCGCCGCTCGGCCTTCAATGTCGGCATCAACGTGCGCCGCACGATCTTCCTCACCTATGTGATCTCGGGGGCCGCCTGCGGGCTGGCCGGCTTCCTCTTCGCCGCGCGCCTTTCCGGCGTCGGGCCGGGCACGGGGCTGGGCCTGGAGCTCGCCGCCCTCACCGCCGCCGTCGTCGGCGGCAACAGCCTCGGCGGGGGGCGCGGCTCCATCGCCAAGGGGCTGATGGGCGCCGTCGTCGTGCTGCTCATCACCAACGGCCTCATCCGCATGGGCGCGGGCACCGGCACCAGCCAGCTCATCGTCGGCCTGCTGCTGGCGGCCGCCATCGTGCTCGACGTGCGCTGGCTGAAGAACCGCCACAAGGTCCTGTCCGAAGTCTATGTCGCCCCGCTGCACCATGCCATGCAGCCCGCCCAGTCGGCGCTGCCGGGCTCGGGCACGGCCTATGCGCTGAACGATGCGCTGGCCTCGGCCGAGCCCATCGCGCTCGGCACGGTCGAGGGGCCGGAGGACGTGATCCTCGATGCCGACGACAATCTCTATGCCGGCACGCGTCATGGCCAGATCGTGCGCTGGTTCGCGCCGGACTATACGCGCTCGGAGGTGTTCGCCCATATCGGCGGCTTCCCGCTCGGCCTCGCCATGGGCCGCGACGGGGAGATCGTCTCCTGCGTCGGCGCCATGGGCCTATACGGCGTGGCGAAGGACGGCGACGTGCGCGAGCTTTCCACGGAGACGCAGCGCTCGCTCTTCTCGGTCGTCGACGACGCGCGCCTGCGCGATCCGAACGATTGCGACATCGGCCCGGACGGGCGTATCTGGTTCACCGATTCCACCACGCGCTACGATGCCCATGACTGGGCGCTCGATTCCATCGAAAGCCGGCCGACCGGCCGCCTCCTCGTCCACGACCCGAAGACCGGCAGGACGCGCACCGTGCTGAAGAACCTGCGCTACGCCAACGGCGTCTGCCTCTCCCATGACGGCCAGTCGCTGCTGATCGCCGAAAGCTGGGCCTGCTCGGTGCACCGCTACTGGATCGCCGGCCCGAAGGAGGGCCGGCTGGAAACGGTGATCCGCGACATGCCCGGCTATCCCGACAACATCAACCGCGCCTCGGATGGCACCTACTGGATGGCGTGGCTCGGCATGCGCACGCCGAGCTTCGACATGGCGCTGCGCCACCCCGCGATGCGCAAGCGCATGACGCGCAACCTGCCGCAGGACGACTGGCTCTTCCCGAACATCAACACCGGCGGCGTGGTGAAGTTCGACGAGACGGGCGCCATCGTCGCCACGCTCGGCGATCTCGGCGGCGCGGCCCATCCGATGGTCACCTCGATGCGCGAGCACAAGGGCTGGCTCTATATCGGCGGCATCCTCAACAACCGCATCGGCCGCATCCGCCTGCCCGATGCCGATCCGGAATGGACAAGCTGGAATTCCTACTGGGGAGACAGGGCATGA
PROTEIN sequence
Length: 708
MTLREKLTRLRYNKVPDHLLGEILSKSWADNLVPFAFLLVVVAAFGLLLPGFFAPSSLLDTTRQLGEFLIVVLGLTVVIIGGGIDLSVGSIFALAAFATLAVIYIAEGPVWLALLAALGAGALFGALNGFLVGYLRLRAFLTTLVTLIIGRSLYDILITTWGARIQSSPVFNDTFDHIGMGAVWGQPISALIALAFALVAHLVMSRSRIGWHFTAVGGARRSAFNVGINVRRTIFLTYVISGAACGLAGFLFAARLSGVGPGTGLGLELAALTAAVVGGNSLGGGRGSIAKGLMGAVVVLLITNGLIRMGAGTGTSQLIVGLLLAAAIVLDVRWLKNRHKVLSEVYVAPLHHAMQPAQSALPGSGTAYALNDALASAEPIALGTVEGPEDVILDADDNLYAGTRHGQIVRWFAPDYTRSEVFAHIGGFPLGLAMGRDGEIVSCVGAMGLYGVAKDGDVRELSTETQRSLFSVVDDARLRDPNDCDIGPDGRIWFTDSTTRYDAHDWALDSIESRPTGRLLVHDPKTGRTRTVLKNLRYANGVCLSHDGQSLLIAESWACSVHRYWIAGPKEGRLETVIRDMPGYPDNINRASDGTYWMAWLGMRTPSFDMALRHPAMRKRMTRNLPQDDWLFPNINTGGVVKFDETGAIVATLGDLGGAAHPMVTSMREHKGWLYIGGILNNRIGRIRLPDADPEWTSWNSYWGDRA*