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SCNpilot_expt_1000_bf_scaffold_2043_curated

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Displaying 26 items
*intergenic gaps > 150 nt are marked
name lists location/seqs annotations notes
SCNpilot_expt_1000_bf_scaffold_2043_curated_1
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(2..1195)
DNA (1194bp) protein (398aa)
MFS transporter {ECO:0000313|EMBL:KJB93191.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
major facilitator superfamily protein; K08167 MFS transporter, DHA2 family, methyl viologen resistance protein SmvA rbh
Major facilitator superfamily MFS_1 n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JTR2_HYPDA rbh
SCNpilot_expt_1000_bf_scaffold_2043_curated_2
Skermanella aerolata, Skermanella, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

1283..1816
DNA (534bp) protein (178aa)
TetR family transcriptional regulator {ECO:0000313|EMBL:KJB93192.1}; TaxID=1385368 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Skermanella.;" source="Skermanella aerolata KACC 11604.;"
TetR family transcriptional regulator
Transcriptional regulator, TetR family n=1 Tax=Hyphomicrobium denitrificans (strain ATCC 51888 / DSM 1869 / NCIB 11706 / TK 0415) RepID=D8JTR1_HYPDA
SCNpilot_expt_1000_bf_scaffold_2043_curated_3

Not on your lists

2195..2449
DNA (255bp) protein (85aa)
Antitoxin ParD n=5 Tax=root RepID=PARD_ECOLX
Partitioning protein {ECO:0000313|EMBL:AFR44061.1}; TaxID=77133 species="Bacteria; environmental samples.;" source="uncultured bacterium.;"
putative plasmid stabilization protein
SCNpilot_expt_1000_bf_scaffold_2043_curated_4
Rhizobium etli, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2446..2781
DNA (336bp) protein (112aa)
putative plasmid stabilization protein
Probable plasmid stabilization protein n=1 Tax=Rhizobium etli (strain CIAT 652) RepID=B3Q492_RHIE6
Probable plasmid stabilization protein {ECO:0000313|EMBL:ACE94896.1}; TaxID=491916 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium etli (strain CIAT 652).;"
SCNpilot_expt_1000_bf_scaffold_2043_curated_5
Agrobacterium rhizogenes, Agrobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

2959..4602
DNA (1644bp) protein (548aa)
hypothetical protein n=1 Tax=Rhizobium sp. 2MFCol3.1 RepID=UPI000375B44B rbh
Na+/H+ antiporter; K03316 monovalent cation:H+ antiporter, CPA1 family rbh
Sodium:proton antiporter {ECO:0000313|EMBL:KEA03575.1}; TaxID=359 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Agrobacterium.;" source="Agrobacterium rhizogenes.;"
SCNpilot_expt_1000_bf_scaffold_2043_curated_6
Rhizobium sp. R1-200B4, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(4848..6071)
DNA (1224bp) protein (408aa)
Uncharacterized protein {ECO:0000313|EMBL:KEQ05697.1}; TaxID=1509405 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. R1-200B4.;"
hypothetical protein rbh
Uncharacterized protein n=1 Tax=Agrobacterium tumefaciens (strain C58 / ATCC 33970) RepID=Q7CT44_AGRT5 rbh
SCNpilot_expt_1000_bf_scaffold_2043_curated_7
Bordetella sp. 8-296-03, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(6482..7969)
DNA (1488bp) protein (496aa)
ABC transporter, ATP-binding protein {ECO:0000313|EMBL:KCB35809.1}; TaxID=1331258 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella hinzii 8-296-03.;"
Ribose ABC transporter ATP-binding protein n=1 Tax=Pseudomonas sp. (strain M1) RepID=L1HVK3_PSEUO rbh
ribose ABC transporter ATP-binding protein (EC:3.6.3.17); K02056 simple sugar transport system ATP-binding protein [EC:3.6.3.17] rbh
SCNpilot_expt_1000_bf_scaffold_2043_curated_8
Pseudomonas sp. M1, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(7966..9036)
DNA (1071bp) protein (357aa)
Putative enzyme n=1 Tax=Pseudomonas sp. (strain M1) RepID=L1HVE2_PSEUO rbh
Uncharacterized protein {ECO:0000313|EMBL:ETM67453.1}; TaxID=95619 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain M1).;"
hypothetical protein rbh
SCNpilot_expt_1000_bf_scaffold_2043_curated_9
Pseudomonas sp. M1, Pseudomonas, Pseudomonadales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(9033..11156)
DNA (2124bp) protein (708aa)
ABC transporter permease {ECO:0000313|EMBL:ETM67452.1}; TaxID=95619 species="Bacteria; Proteobacteria; Gammaproteobacteria; Pseudomonadales; Pseudomonadaceae; Pseudomonas.;" source="Pseudomonas sp. (strain M1).;"
Gluconolactonase n=1 Tax=Pseudomonas sp. (strain M1) RepID=L1HUA6_PSEUO rbh
permease component of ribose/xylose/arabinose/galactoside ABC-type transporters rbh
SCNpilot_expt_1000_bf_scaffold_2043_curated_10
Rhodobacter sp. SW2, Rhodobacter, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(11216..11641)
DNA (426bp) protein (142aa)
Binding protein component of sugar ABC transporter n=1 Tax=Rhodobacter sp. SW2 RepID=C8RZX4_9RHOB
Binding protein component of sugar ABC transporter {ECO:0000313|EMBL:EEW25583.1}; Flags: Precursor;; TaxID=371731 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodobacter.;" source="Rhodobacter sp. SW2.;"
sugar ABC transporter substrate-binding protein
SCNpilot_expt_1000_bf_scaffold_2043_curated_11
unknown

Not on your lists

11905..12135
DNA (231bp) protein (77aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2043_curated_12
Acidisphaera rubrifaciens, Acidisphaera, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(12283..13152)
DNA (870bp) protein (290aa)
Inner-membrane translocator n=1 Tax=Rhodobacter sp. SW2 RepID=C8RZX3_9RHOB
ABC transporter monosaccharide permease {ECO:0000313|EMBL:GAN77432.1}; TaxID=1231350 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Acetobacteraceae; Acidisphaera.;" source="Acidisphaera rubrifaciens HS-AP3.;"
ABC transporter permease (EC:3.6.3.17); K02057 simple sugar transport system permease protein
SCNpilot_expt_1000_bf_scaffold_2043_curated_13
Rhodovulum sulfidophilum, Rhodovulum, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(13336..14298)
DNA (963bp) protein (321aa)
Alcohol dehydrogenase, zinc-binding domain-containing protein {ECO:0000313|EMBL:BAQ69638.1}; TaxID=35806 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Rhodovulum.;" source="Rhodovulum sulfidophilum (Rhodobacter sulfidophilus).;"
Alcohol dehydrogenase zinc-binding domain protein n=1 Tax=Rhodobacter sp. SW2 RepID=C8RZY0_9RHOB rbh
Alcohol dehydrogenase, zinc-binding domain protein; K00344 NADPH2:quinone reductase [EC:1.6.5.5] rbh
SCNpilot_expt_1000_bf_scaffold_2043_curated_14
Methylobacterium sp. 4-46, Methylobacterium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14302..14712)
DNA (411bp) protein (137aa)
alkylhydroperoxidase n=1 Tax=Acidobacteriaceae bacterium KBS 89 RepID=UPI00035C6873
alkylhydroperoxidase
Alkyl hydroperoxide reductase AhpD {ECO:0000256|SAAS:SAAS00088523}; EC=1.11.1.15 {ECO:0000256|SAAS:SAAS00088503};; TaxID=426117 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Methylobacterium.;" source="Methylobacterium sp. (strain 4-46).;"
SCNpilot_expt_1000_bf_scaffold_2043_curated_15
Rhodospirillum rubrum, Rhodospirillum, Rhodospirillales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(14733..15587)
DNA (855bp) protein (285aa)
aminotransferase (EC:2.6.1.42); K00826 branched-chain amino acid aminotransferase [EC:2.6.1.42] rbh
Aminotransferase n=2 Tax=Rhodospirillum rubrum RepID=G2T7H7_RHORU rbh
Aminotransferase, class IV {ECO:0000313|EMBL:ABC21105.1}; EC=2.6.1.42 {ECO:0000313|EMBL:ABC21105.1};; TaxID=269796 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Rhodospirillaceae; Rhodospirillum.;" source="Rhodospirillum rubrum (strain ATCC 11170 / ATH 1.1.1 / DSM 467 / LMG; 4362 / NCIB 8255 / S1).;"
SCNpilot_expt_1000_bf_scaffold_2043_curated_16
Rhizobium sp. CCGE 510, Rhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

15670..16596
DNA (927bp) protein (309aa)
HTH-type transcriptional regulator n=1 Tax=Rhizobium sp. CCGE 510 RepID=J6DU51_9RHIZ
HTH-type transcriptional regulator {ECO:0000313|EMBL:EJT06906.1}; TaxID=1132836 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Rhizobiaceae; Rhizobium/Agrobacterium group; Rhizobium.;" source="Rhizobium sp. CCGE 510.;"
LysR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2043_curated_17
Cronobacter malonaticus, Cronobacter, Enterobacteriales, Gammaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(16718..17092)
DNA (375bp) protein (125aa)
Uncharacterized protein n=1 Tax=Cronobacter sakazakii CMCC 45402 RepID=V5TXP5_CROSK
Uncharacterized protein {ECO:0000313|EMBL:CCJ93585.1}; TaxID=1208591 species="Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacteriales; Enterobacteriaceae; Cronobacter.;" source="Cronobacter malonaticus 681.;"
hypothetical protein
SCNpilot_expt_1000_bf_scaffold_2043_curated_18
unknown

Not on your lists

17387..17494
DNA (108bp) protein (36aa)

This feature has no annotations

SCNpilot_expt_1000_bf_scaffold_2043_curated_19
Bordetella bronchiseptica, Bordetella, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(17998..18717)
DNA (720bp) protein (240aa)
FCD domain protein {ECO:0000313|EMBL:KCV61807.1}; TaxID=1331202 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Alcaligenaceae; Bordetella.;" source="Bordetella bronchiseptica 99-R-0433.;"
GntR family transcriptional regulator n=1 Tax=Ralstonia sp. PBA RepID=I9BSQ2_9RALS
GntR family transcriptional regulator
SCNpilot_expt_1000_bf_scaffold_2043_curated_20
R_Rokubacteria_73_56, Rokubacteria, Bacteria

Not on your lists

comp(18752..19363)
DNA (612bp) protein (204aa)
hypothetical protein n=1 Tax=Elioraea tepidiphila RepID=UPI00036E1826
Tax=RIFCSPLOWO2_02_FULL_Rokubacteria_73_56_curated
mandelate racemase/muconate lactonizing protein
SCNpilot_expt_1000_bf_scaffold_2043_curated_21
Mesorhizobium sp. LNHC252B00, Mesorhizobium, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(19916..20413)
DNA (498bp) protein (166aa)
UPI0003CF1783 related cluster n=1 Tax=unknown RepID=UPI0003CF1783
ABC transporter ATP-binding protein {ECO:0000313|EMBL:ESY71220.1}; TaxID=1287252 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Phyllobacteriaceae; Mesorhizobium.;" source="Mesorhizobium sp. LNHC252B00.;"
ABC transporter; K02023 multiple sugar transport system ATP-binding protein
SCNpilot_expt_1000_bf_scaffold_2043_curated_22
unknown

Not on your lists

20743..20919
DNA (177bp) protein (59aa)
Putative uncharacterized protein n=1 Tax=Rhizobium etli CNPAF512 RepID=F2AJ88_RHIET
SCNpilot_expt_1000_bf_scaffold_2043_curated_23
Massilia sp. JS1662, Massilia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(20996..21886)
DNA (891bp) protein (297aa)
sugar ABC transporter permease n=1 Tax=Kaistia granuli RepID=UPI000364C019 rbh
Sugar ABC transporter permease {ECO:0000313|EMBL:KGF82800.1}; TaxID=1519190 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Massilia.;" source="Massilia sp. JS1662.;"
binding-protein-dependent transport systems inner membrane component; K02026 multiple sugar transport system permease protein rbh
SCNpilot_expt_1000_bf_scaffold_2043_curated_24
Microvirga aerilata, Microvirga, Rhizobiales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(21883..22071)
DNA (189bp) protein (63aa)
Sugar ABC transporter permease {ECO:0000313|EMBL:KFG69880.1}; TaxID=670292 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhizobiales; Methylobacteriaceae; Microvirga.;" source="Microvirga aerilata.;"
sugar ABC transporter permease n=1 Tax=Pannonibacter phragmitetus RepID=UPI00038049B8
ABC transporter, inner-membrane protein
SCNpilot_expt_1000_bf_scaffold_2043_curated_25
Burkholderia sp. BT03, Burkholderia, Burkholderiales, Betaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(22840..24084)
DNA (1245bp) protein (415aa)
hypothetical protein n=1 Tax=Kaistia granuli RepID=UPI00037BFC32 rbh
Uncharacterized protein {ECO:0000313|EMBL:EUC18856.1}; TaxID=1144309 species="Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Burkholderiaceae; Burkholderia.;" source="Burkholderia sp. BT03.;"
extracellular solute-binding protein; K02027 multiple sugar transport system substrate-binding protein rbh
SCNpilot_expt_1000_bf_scaffold_2043_curated_26
Paracoccus aminophilus, Paracoccus, Rhodobacterales, Alphaproteobacteria, Proteobacteria, Bacteria

Not on your lists

comp(24360..24572)
DNA (213bp) protein (71aa)
pyrroline-5-carboxylate reductase (EC:1.5.1.2)
Pyrroline-5-carboxylate reductase n=1 Tax=Paracoccus aminophilus JCM 7686 RepID=S5XW62_PARAH
Pyrroline-5-carboxylate reductase {ECO:0000256|HAMAP-Rule:MF_01925}; Short=P5C reductase {ECO:0000256|HAMAP-Rule:MF_01925};; Short=P5CR {ECO:0000256|HAMAP-Rule:MF_01925};; EC=1.5.1.2 {ECO:0000256|HAMAP-Rule:MF_01925};; PCA reductase {ECO:0000256|HAMAP-Rule:MF_01925}; TaxID=1367847 species="Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Paracoccus.;" source="Paracoccus aminophilus JCM 7686.;"
Displaying 26 items

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